PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dr11641.1

Organism

Dioscorea rotundata

Taxonomic ID

55577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Dioscoreales; Dioscoreaceae; Dioscorea

Family

HD-ZIP

Protein Properties

Length: 238aa MW: 27066.1 Da PI: 4.5581

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dr11641.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	60	3.7e-19	39	92	3	56
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k+++++++q+++Le+ Fe ++++ e++ +LA+ lgL+ rqV vWFqNrRa++k Dr11641.1 39 KKRRLSTDQVRALEKSFEVENKLEPERKLRLAQDLGLQPRQVAVWFQNRRARWK 92 45689************************************************9 PP
2	HD-ZIP_I/II	131.2	4.1e-42	38	130	1	93
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 ekkrrls++qv++LE+sFe e+kLeperK +la++LglqprqvavWFqnrRAR+ktkqlE+d++aL+++ydalk + ++L++++e+L +e+k+ Dr11641.1 38 EKKRRLSTDQVRALEKSFEVENKLEPERKLRLAQDLGLQPRQVAVWFQNRRARWKTKQLERDFTALRASYDALKLDYDALHQHKESLLAEIKD 130 69**************************************************************************************99986 PP

Sequence ? help Back to Top
Protein Sequence Length: 238 aa Download sequence
MKRLSSSDCF PSILDGFEDE DCGEDEMCGA GGAHSGGEKK RRLSTDQVRA LEKSFEVENK 60 LEPERKLRLA QDLGLQPRQV AVWFQNRRAR WKTKQLERDF TALRASYDAL KLDYDALHQH 120 KESLLAEIKD LKSKLVGEES FSSVKEEPSS NEDLHPTLIY KDGFSDSDSS AVINEENNSP 180 YPPAPAAVSP VSGLYYQHQL MKMEEEQGFE VPCSSIFSDE QAPMLNWYCS EWNMDSRL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	87	95	RRARWKTKQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G40060.1	6e-51	HD-ZIP family protein

Link Out ? help Back to Top
Ensembl	Dr11641.1