PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dr11689.1
Organism
Dioscorea rotundata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Dioscoreales; Dioscoreaceae; Dioscorea
Family M-type_MADS
Protein Properties Length: 316aa    MW: 34924.3 Da    PI: 8.9782
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dr11689.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF473.3e-151156348
               --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEE CS
     SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklye 48
               ie    r+ t+ kR+ng+lKK +E S+LCd++++ ii+  +g++ e
  Dr11689.1 11 IEKAAARNATYKKRKNGLLKKVKEFSTLCDVNACAIIYPCSGTVPE 56
               888899********************************99998865 PP
Sequence ? help Back to Top
Protein Sequence    Length: 316 aa     Download sequence    
MGRVKVKLAW IEKAAARNAT YKKRKNGLLK KVKEFSTLCD VNACAIIYPC SGTVPEVWSS  60
TPNPMDVLVS FMQELELERR KKMVSQCLEG KDISGLDLET IKSLSLLEDS KLKSVKEKVA  120
KKKAEMAANG EGSSTASASG MHGWCLGFNE HDVIIRXQSG QPSCGNVNPD DGDHDNIAWV  180
KVKLAWIEKA AARKVAYKKR KNGLLKKALK QEKENNELEN IVLLGQCVEG KDLSWLDLET  240
ISNLSLLVDS KLKLVKEKVV KKKAEMTANQ EGSPTISAAG MHGWCLGFNE QGVIIGEQSX  300
XXXKHIEDSF CRCPLL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48670.12e-13M-type_MADS family protein