PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dr11728.1
Organism
Dioscorea rotundata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Dioscoreales; Dioscoreaceae; Dioscorea
Family bHLH
Protein Properties Length: 386aa    MW: 42860.8 Da    PI: 6.521
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dr11728.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH29.11.7e-0996144254
                HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
        HLH   2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                +  +  rE+ RR+r+N+ f+eL ++l +      +K++Ka++L  A++ +k+L
  Dr11728.1  96 KGQKADREKLRRERLNEQFFELGKVLDPE----RPKNDKATVLSDAIQMLKDL 144
                566789******************99887....79****************98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 386 aa     Download sequence    
MGPTSVIQIL ELPRRFPELG RERRKLSRAR SVLGFRNCSN GSVDESPLLS RDLLPRFKVD  60
VIIVGLEAVI FEFLVLGTEF SSKVQQEVKD SMAVRKGQKA DREKLRRERL NEQFFELGKV  120
LDPERPKNDK ATVLSDAIQM LKDLTAQVDR LKAEYMTLSE ESKELTQEKN ELREEKAKIK  180
SDIDNLNAQY QQRLRVMFPW GAMDHSVIMG HPPSYPFPVP VPIASGPIAI HPSMPPYHYL  240
RGPNPGAYPA YTPYSTTSNH QGDQPSNQQN NPNPPPSCEQ SHDTSEKDCG SKLSDNHTQS  300
GAERREDFSD VPTELELKTP GSTGPSSLSQ VAHDQELSSE GREGTKLARR KKCVSSXGST  360
PSSCSSSCDL PESSSYSIGD GSVANQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19860.11e-69bHLH family protein