PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dr11870.1

Organism

Dioscorea rotundata

Taxonomic ID

55577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Dioscoreales; Dioscoreaceae; Dioscorea

Family

C3H

Protein Properties

Length: 349aa MW: 38132.1 Da PI: 7.2998

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dr11870.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	24.8	3.9e-08	96	120	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +kt+lC+ f++ GtC+y +C+FaHg Dr11870.1 96 FKTKLCCKFRA-GTCPYITNCNFAHG 120 69*******.***********8 PP
2	zf-CCCH	18.2	4.4e-06	166	191	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 yk + C+ f+ C+yGd C+F H+ Dr11870.1 166 YKGRHCKKFYTEEGCPYGDACTFLHD 191 78888********************7 PP
3	zf-CCCH	41.9	1.7e-13	228	253	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +kt++C+ + tG C++G++C+FaHg Dr11870.1 228 WKTRICNKWEMTGNCPFGSKCHFAHG 253 8************************8 PP

Sequence ? help Back to Top
Protein Sequence Length: 349 aa Download sequence
MDYNSNAIEI IPEPTVPGGA NSWTSNLNDQ ALWATEDDYR SWNGETSVDS MSNSVQDSRQ 60 GPSRAGGEQT PTKKARNDSQ GNGSNSKSKA IGKMFFKTKL CCKFRAGTCP YITNCNFAHG 120 IEELRKPPPN WQEIVAAHDE ASEPREEHQI PIITSSNVSG DTQRSYKGRH CKKFYTEEGC 180 PYGDACTFLH DEQSRSRESV AISLGPSMGS SGNYAAVANP TAQKPSNWKT RICNKWEMTG 240 NCPFGSKCHF AHGAAELHKY GGGLVEIEGG SAPSAAQESK HAGVPLKAPT DTVVAANTSV 300 PHAEVYHHIG TPAQRSVGIP QRQGQRQFQK WKGPDKISRI YGDWIDEIE

Sequence ? help Back to Top

Protein Sequence Length: 349 aa Download sequence

MDYNSNAIEI IPEPTVPGGA NSWTSNLNDQ ALWATEDDYR SWNGETSVDS MSNSVQDSRQ  60
GPSRAGGEQT PTKKARNDSQ GNGSNSKSKA IGKMFFKTKL CCKFRAGTCP YITNCNFAHG  120
IEELRKPPPN WQEIVAAHDE ASEPREEHQI PIITSSNVSG DTQRSYKGRH CKKFYTEEGC  180
PYGDACTFLH DEQSRSRESV AISLGPSMGS SGNYAAVANP TAQKPSNWKT RICNKWEMTG  240
NCPFGSKCHF AHGAAELHKY GGGLVEIEGG SAPSAAQESK HAGVPLKAPT DTVVAANTSV  300
PHAEVYHHIG TPAQRSVGIP QRQGQRQFQK WKGPDKISRI YGDWIDEIE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G32360.1	1e-117	C3H family protein

Link Out ? help Back to Top
Ensembl	Dr11870.1