PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dr11877.1

Organism

Dioscorea rotundata

Taxonomic ID

55577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Dioscoreales; Dioscoreaceae; Dioscorea

Family

MYB

Protein Properties

Length: 335aa MW: 37289.4 Da PI: 6.1721

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dr11877.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	55.8	1e-17	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd++l+++++ G g+W++ ++ g++R++k+c++rw +yl Dr11877.1 14 KGPWTPEEDKKLIEYINNNGHGSWRRLPKLAGLNRCGKSCRLRWTNYL 61 79********************************************97 PP
2	Myb_DNA-binding	53.8	4.3e-17	67	112	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rgr+ +E++l+++++ lG++ W+tIa++++ gRt++++k++w+++l Dr11877.1 67 RGRFDDDEEKLIIHLHSILGNK-WSTIAARLP-GRTDNEIKNYWNTHL 112 89******************.*****.**********996 PP

Sequence ? help Back to Top
Protein Sequence Length: 335 aa Download sequence
MGRSPCCEET GVKKGPWTPE EDKKLIEYIN NNGHGSWRRL PKLAGLNRCG KSCRLRWTNY 60 LRPDIKRGRF DDDEEKLIIH LHSILGNKWS TIAARLPGRT DNEIKNYWNT HLRKKLLQMG 120 IDPVTHQKRS DLGFLAGIPN MFAFSGNLDM NALKLQADAA KLARVQLLQS LIQLIASTSS 180 PSSSDLLINH HVYGSSSLGS FGVSPTQDLN LGVGNTNNNQ EFFMESNNGG GDNGNTVMMI 240 NGCPCPYNIH DHNSQHSTPS LVPASPETLD NNNNNNNNNN NISNNISIDQ TQDQANCFAD 300 ECIDISRNSN TSFGDWDGLN FDDSNTDLCW KDILE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G34670.1	2e-80	MYB family protein

Link Out ? help Back to Top
Ensembl	Dr11877.1