PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dr11978.1

Organism

Dioscorea rotundata

Taxonomic ID

55577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Dioscoreales; Dioscoreaceae; Dioscorea

Family

NAC

Protein Properties

Length: 363aa MW: 40595.1 Da PI: 8.7047

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dr11978.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	170.5	5.3e-53	14	141	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kgel 99 lppGfrFhPtdeel+ +yL++++++ ++++ ++i+evdiyk++PwdLp ++k +++ewyfFs+rd+ky++g r+nra++sgyWkatg+dk+++++ ++ + Dr11978.1 14 LPPGFRFHPTDEELILHYLRNRASSAPCPV-SIIAEVDIYKFDPWDLPPMAKFGDREWYFFSPRDRKYPNGVRPNRAAASGYWKATGTDKPIHTSsSNVN 112 79**************************.89**********9777889***********************************9856677 PP NAM 100 vglkktLvfykgrapkgektdWvmheyrl 128 +g+kk Lvfykgr pkg kt+W+mheyrl Dr11978.1 113 IGVKKALVFYKGRPPKGLKTNWIMHEYRL 141 *************************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 363 aa Download sequence
MISPETMANP ATSLPPGFRF HPTDEELILH YLRNRASSAP CPVSIIAEVD IYKFDPWDLP 60 PMAKFGDREW YFFSPRDRKY PNGVRPNRAA ASGYWKATGT DKPIHTSSSN VNIGVKKALV 120 FYKGRPPKGL KTNWIMHEYR LAEAQSNSHT YRPMRLRDSS MRLDDWVLCR IYKKSNHXSV 180 DQPSMDREQA EDSSSEDVHL STSSTANTVQ PKQPLDLHKS SSLSELLNLL FDNPSEILGA 240 EPAAAGGGGG GGGNYSGAIM GHSTNATSSN QAQFISNSSG NYNAYFYQRH THNEQQLPAF 300 LSDNSLKRQR PEDQGLMQPP KKLNSSCINP SFSNQFSGPQ YNLLSHQPLL NQQILLDSHL 360 RLH

Sequence ? help Back to Top

Protein Sequence Length: 363 aa Download sequence

MISPETMANP ATSLPPGFRF HPTDEELILH YLRNRASSAP CPVSIIAEVD IYKFDPWDLP  60
PMAKFGDREW YFFSPRDRKY PNGVRPNRAA ASGYWKATGT DKPIHTSSSN VNIGVKKALV  120
FYKGRPPKGL KTNWIMHEYR LAEAQSNSHT YRPMRLRDSS MRLDDWVLCR IYKKSNHXSV  180
DQPSMDREQA EDSSSEDVHL STSSTANTVQ PKQPLDLHKS SSLSELLNLL FDNPSEILGA  240
EPAAAGGGGG GGGNYSGAIM GHSTNATSSN QAQFISNSSG NYNAYFYQRH THNEQQLPAF  300
LSDNSLKRQR PEDQGLMQPP KKLNSSCINP SFSNQFSGPQ YNLLSHQPLL NQQILLDSHL  360
RLH

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69490.1	6e-89	NAC family protein

Link Out ? help Back to Top
Ensembl	Dr11978.1