PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dr12011.1
Organism
Dioscorea rotundata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Dioscoreales; Dioscoreaceae; Dioscorea
Family MYB
Protein Properties Length: 260aa    MW: 29949.9 Da    PI: 9.9235
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dr12011.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.42.4e-164996148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEd +lv ++++ G+g+W++++   g+ R+ k+c++rw +yl
        Dr12011.1 49 KGPWTPEEDIILVSYIQENGPGNWRSVPTNTGLMRCSKSCRLRWTNYL 96
                     79********************************************97 PP
2Myb_DNA-binding491.4e-15102147148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg++T+ E+  ++++ ++lG++ W++Ia++++  Rt++++k++w+++l
        Dr12011.1 102 RGNFTPHEERMIIHLQALLGNR-WAAIASYLP-QRTDNDIKNYWNTHL 147
                      89********************.*********.************996 PP
Sequence ? help Back to Top
Protein Sequence    Length: 260 aa     Download sequence    
MLYMIKHSHK FIRKRKVKLE KQRERERERA KEEEVMGRPP CCDKLGIKKG PWTPEEDIIL  60
VSYIQENGPG NWRSVPTNTG LMRCSKSCRL RWTNYLRPGI KRGNFTPHEE RMIIHLQALL  120
GNRWAAIASY LPQRTDNDIK NYWNTHLKKK MKMSSSEVQS QSSTSNDLTF KGLNTETSNS  180
YSSSYASSAQ NISRLLEGWK RSPAINNTQA MQQEHSIGNE GFGSLISFEK DSELQSMSML  240
ETWLLDEASG QPFFSNSFSS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08810.12e-82MYB family protein