PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dr12089.1
Organism
Dioscorea rotundata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Dioscoreales; Dioscoreaceae; Dioscorea
Family NF-YA
Protein Properties Length: 312aa    MW: 34002.7 Da    PI: 8.4729
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dr12089.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA101.48.7e-32148204158
  CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                +ep+YVNaKQy++Il+RRq+Rak+e ekkl +k r+pylh+SRh+hA+rR+Rg+gGrF
  Dr12089.1 148 EEPVYVNAKQYHGILRRRQSRAKAELEKKL-IKVRRPYLHDSRHQHAMRRARGCGGRF 204
                69****************************.**************************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 312 aa     Download sequence    
MGTRSKSANS VESDVQRSMP STIVAQPWWR GPGFGATAPP SADPDGGDVS KHAGQXQVHD  60
KVDNSADVQK QMQTLGIPTD GICGQEHQHQ PFVSSSVPTM MTEYHACAAY PYADPYALMN  120
AYGNPAMVHP HLIGMPHTRM PLPLEMTEEP VYVNAKQYHG ILRRRQSRAK AELEKKLIKV  180
RRPYLHDSRH QHAMRRARGC GGRFLNTKKN DGNTANPNTD NTTNPGATLP VSLPKSSPSE  240
APPSGCSENQ ITANQMQQPA YTNGTDGYPQ SGFQLSAFHA MQGERIDEGD CSGQQRGGIL  300
VNQSSNRAVT IQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G20910.11e-39NF-YA family protein