PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dr12211.1

Organism

Dioscorea rotundata

Taxonomic ID

55577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Dioscoreales; Dioscoreaceae; Dioscorea

Family

LBD

Protein Properties

Length: 160aa MW: 18369.8 Da PI: 4.9708

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dr12211.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	124	7.6e-39	22	121	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkee 100 +Ca+C+ l r+C++dCvlapyfpa+qp+kfa vhk+FGasnv+k+l ++ee+reda++s+vyeA+ r++dPvyG++g+i lq+ ++ l+ +l++++++ Dr12211.1 22 PCAGCRKLHRRCNRDCVLAPYFPASQPEKFARVHKVFGASNVIKMLLGIEEERREDAVESMVYEAHERLKDPVYGCTGTIVYLQNCVKDLQGQLKATQDQ 121 7*********************************************************************************************999876 PP

Sequence ? help Back to Top
Protein Sequence Length: 160 aa Download sequence
MDDQQGPQYY VGQEGVQMNN MPCAGCRKLH RRCNRDCVLA PYFPASQPEK FARVHKVFGA 60 SNVIKMLLGI EEERREDAVE SMVYEAHERL KDPVYGCTGT IVYLQNCVKD LQGQLKATQD 120 QRDQLINIIM NENTTTFDDN SNFICNNNSF CFSLDQFQLI

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G28500.1	2e-40	LBD family protein

Link Out ? help Back to Top
Ensembl	Dr12211.1