PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dr12346.1

Organism

Dioscorea rotundata

Taxonomic ID

55577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Dioscoreales; Dioscoreaceae; Dioscorea

Family

MYB

Protein Properties

Length: 233aa MW: 27134.1 Da PI: 8.4883

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dr12346.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	62.3	9.9e-20	4	49	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg W +eEde+l+++v+++G+ +W++Ia++++ gR++k+c++rw++ Dr12346.1 4 RGHWRPEEDEKLKELVARYGPQNWNSIAEKLQ-GRSGKSCRLRWYNQ 49 899***************************.**********96 PP
2	Myb_DNA-binding	58.4	1.7e-18	56	99	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 r+++++eE+e+l+ +++ +G++ W++Iar ++ gRt++ +k++w+ Dr12346.1 56 RNPFSEEEEERLLSLHRVHGNR-WAAIARLFP-GRTDNAVKNHWHV 99 789*****************.*****.*********96 PP

Sequence ? help Back to Top
Protein Sequence Length: 233 aa Download sequence
MCTRGHWRPE EDEKLKELVA RYGPQNWNSI AEKLQGRSGK SCRLRWYNQL DPRINRNPFS 60 EEEEERLLSL HRVHGNRWAA IARLFPGRTD NAVKNHWHVI MARRCREKSR VQAKRSSAGC 120 CTSEKPDDNK KRKLEAQNIE QTVTKYCRSS QEYSSVNKCH HNPSDIFSGI HGSSSNMTED 180 RENSVEFYDF LQVNTDSENM KDGRRSLDKE EDKEQHSEGS VQFIDFLKVG SSS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G17950.1	4e-76	MYB family protein

Link Out ? help Back to Top
Ensembl	Dr12346.1