PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dr12358.1

Organism

Dioscorea rotundata

Taxonomic ID

55577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Dioscoreales; Dioscoreaceae; Dioscorea

Family

HD-ZIP

Protein Properties

Length: 359aa MW: 39761.2 Da PI: 7.9291

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dr12358.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	55.4	1e-17	204	258	2	56
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ +++k+q Lee F+++++++ +++ LAk+l+L rqV vWFqNrRa+ k Dr12358.1 204 RKKLRLSKDQSAFLEESFKEHNTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTK 258 788899***********************************************98 PP
2	HD-ZIP_I/II	127.4	6e-41	204	293	1	91
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 +kk+rlsk+q+++LEesF+e+++L+p++K +la++L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l+een+rL+ke +eLr +l Dr12358.1 204 RKKLRLSKDQSAFLEESFKEHNTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCETLTEENRRLHKELTELR-AL 293 69*************************************************************************************9.55 PP

Sequence ? help Back to Top
Protein Sequence Length: 359 aa Download sequence
MMIPSKSKGT SLLFDGQFPS AFPADISLMF FLDVIAAISI ALCRDEHVGE QRSSSNRVLT 60 LREITIELGE SHSTLEFSFS LELKKKKKKM ELGLSLRLGA AAVMVEDTEE CSGDPPVQLD 120 LLPREPVHRL QCSSSSLALC WHPDNVRNIE ASTRGFDVNC MPSTETDNEA APPPPSPNNS 180 SGSPLPLDRA WSRASDEDEN NLSRKKLRLS KDQSAFLEES FKEHNTLNPK QKLALAKQLN 240 LRPRQVEVWF QNRRARTKLK QTEVDCEYLK RCCETLTEEN RRLHKELTEL RALKATAAHP 300 LLSHLPATTL SMCPSCERVS SSSSSAAAGK PGTTAAPFSS AFLSRPRFFP FAPHPSAAS

Sequence ? help Back to Top

Protein Sequence Length: 359 aa Download sequence

MMIPSKSKGT SLLFDGQFPS AFPADISLMF FLDVIAAISI ALCRDEHVGE QRSSSNRVLT  60
LREITIELGE SHSTLEFSFS LELKKKKKKM ELGLSLRLGA AAVMVEDTEE CSGDPPVQLD  120
LLPREPVHRL QCSSSSLALC WHPDNVRNIE ASTRGFDVNC MPSTETDNEA APPPPSPNNS  180
SGSPLPLDRA WSRASDEDEN NLSRKKLRLS KDQSAFLEES FKEHNTLNPK QKLALAKQLN  240
LRPRQVEVWF QNRRARTKLK QTEVDCEYLK RCCETLTEEN RRLHKELTEL RALKATAAHP  300
LLSHLPATTL SMCPSCERVS SSSSSAAAGK PGTTAAPFSS AFLSRPRFFP FAPHPSAAS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	203	209	SRKKLRL
2	253	261	RRARTKLKQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06710.1	4e-57	HD-ZIP family protein

Link Out ? help Back to Top
Ensembl	Dr12358.1