PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dr12410.1
Organism
Dioscorea rotundata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Dioscoreales; Dioscoreaceae; Dioscorea
Family M-type_MADS
Protein Properties Length: 172aa    MW: 19325.7 Da    PI: 9.8752
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dr12410.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF60.91.5e-19958150
               S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
     SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
               k+i++++n qvt+skR++g++KK +ELSvL d+++a i +s tg++  +s
  Dr12410.1  9 KKINEETNLQVTYSKRKKGLMKKTYELSVLSDIDAAFISISGTGRVSSFS 58
               6899******************************************9997 PP
Sequence ? help Back to Top
Protein Sequence    Length: 172 aa     Download sequence    
MGRHKLPMKK INEETNLQVT YSKRKKGLMK KTYELSVLSD IDAAFISISG TGRVSSFSAT  60
TSSRAQREAL QENLKRKQDE LFAAKEQLSK FKSDGKYVMT SIHEGSAREH MLQQTLDQLQ  120
ARKKILLENL KTSVEGSTSQ QEEMLKGQAT TPAQTENDIS ANNPDNNEHF SS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G77950.22e-17MIKC_MADS family protein