PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dr12426.1
Organism
Dioscorea rotundata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Dioscoreales; Dioscoreaceae; Dioscorea
Family MYB
Protein Properties Length: 843aa    MW: 94443 Da    PI: 5.6101
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dr12426.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox53.93.1e-1790143356
                --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
   Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                k+++++ eq+++Le+ Fe  +++  e++ +LA+ lgL+ rq+ +WFqNrRa++k
  Dr12426.1  90 KKRRLNMEQVRTLEKNFELGNKLEPERKMQLARALGLQPRQIAIWFQNRRARWK 143
                456899***********************************************9 PP
2Myb_DNA-binding46.77.1e-15401445348
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      +WT+eEdell + v  +G + W++Ia+++   +t  qc+ rw++yl
        Dr12426.1 401 SWTPEEDELLRQQVSIYGADGWTSIAAKFK-DKTSRQCRRRWYTYL 445
                      6****************************9.*************97 PP
3Myb_DNA-binding40.46.8e-13451494146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      +g W++eEd +l +a + +G++ W+ Ia+ +  gRt++ +k+r+ +
        Dr12426.1 451 KGGWSAEEDMILCEAQRIFGNR-WTEIAKVVS-GRTDNAVKNRFST 494
                      688*******************.*********.**********976 PP
Sequence ? help Back to Top
Protein Sequence    Length: 843 aa     Download sequence    
MACNGMASPF FPPNFLLQMQ TPHEDHHEHT QPSSTTLSPL LPATTPCTTT PPDFRAMLGK  60
RSMSFSGIEP CEEMTGDDDL SDDCSQAGEK KRRLNMEQVR TLEKNFELGN KLEPERKMQL  120
ARALGLQPRQ IAIWFQNRRA RWKTKQLEKD YDVLKRQFEA LKSENDALQA HNKKLQSELL  180
ALKGREISEP INLNKETEGS CSNRSENSSE INLDISRTSV TETSPLNQQQ NSRAFFTAVR  240
PGSMTQLLQA GSTKIENSAP EENLCNMFCN MDDQSAFWAW DSEYGVVLLS NRVKSSSPAP  300
LFKDPSFEPS ALPAVASSAP ADRCDFGYET IGGAEMVPRL RSIVFSRVGM SGPRGLCFGA  360
VFNWRLGIDD YVGIVEMEKG FDRVTAMENA ITVKKDRHIV SWTPEEDELL RQQVSIYGAD  420
GWTSIAAKFK DKTSRQCRRR WYTYLNTECK KGGWSAEEDM ILCEAQRIFG NRWTEIAKVV  480
SGRTDNAVKN RFSTLCKKRA KLEASLKENN GVNTSTNNKR LMVHKDHNIG VESSASSKQD  540
GYPTSAHTEN SNAKQQILRR QEMRPPLAEI VQNCNNVCNL PVQLLDNGKA NEAVSNNKIQ  600
GSFLKRDDPK ITALLQQAEL LSSLAEKVNS ENTKQSLEDA WKELQDYLLQ TEDSDLLRSK  660
ISGMDTLLED FKDLIEDLKN ENYEGHSSMG NPDLCERSLV TSECNVESTK HSNALTNENQ  720
HQQNEFSSEH HDLIVKLPHD NASCPIISAD QETITITSAE PLKENCENIS VLPGPEFASP  780
VQMVPPFNSF AEGIPTPKFS TSERNFLLNL LDMPSPSPSP NSSKAPSCKR ALLNSLDHYH  840
PPT
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1138146RRARWKTKQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02820.21e-101MYB family protein