PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dr12480.1
Organism
Dioscorea rotundata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Dioscoreales; Dioscoreaceae; Dioscorea
Family M-type_MADS
Protein Properties Length: 102aa    MW: 11209 Da    PI: 10.438
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dr12480.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF534.3e-173371745
               HHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
     SRF-TF  7 snrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45
                +rq tf+kR++g+ KK  ELS+LC+++va++ fs++gk
  Dr12480.1 33 NKRQGTFTKRKKGLTKKVRELSILCGVQVALLAFSPSGK 71
               579**********************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 102 aa     Download sequence    
YSLNNNTPAT KDVYIGGEMA REKVEVTRKA TANKRQGTFT KRKKGLTKKV RELSILCGVQ  60
VALLAFSPSG KPNLILGENS EAKAEVSITT SKQNICKIEF YS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13790.15e-15MIKC_MADS family protein