PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dr12734.1

Organism

Dioscorea rotundata

Taxonomic ID

55577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Dioscoreales; Dioscoreaceae; Dioscorea

Family

MYB

Protein Properties

Length: 634aa MW: 70441.3 Da PI: 8.8712

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dr12734.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	54.4	2.9e-17	59	105	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g WT++Ede l +av+ + g++Wk+Ia++++ R++ qc +rwqk+l Dr12734.1 59 KGGWTPQEDETLRNAVEAYKGRSWKKIAEYFP-DRSEVQCLHRWQKVL 105 688***************************.**********986 PP
2	Myb_DNA-binding	62	1.2e-19	111	157	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd++++++v+++G+ W+ Ia+ ++ gR +kqc++rw+++l Dr12734.1 111 KGPWTQEEDKKIIELVAKYGPTKWSVIAKSLP-GRIGKQCRERWHNHL 157 79****************************.***********97 PP
3	Myb_DNA-binding	56.8	5.2e-18	163	206	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +++WT eE++ l +a++ +G++ W+ Ia+ ++ gRt++++k++w++ Dr12734.1 163 KDAWTLEEELALMNAHHIHGNK-WAEIAKVLP-GRTDNSIKNHWNS 206 679*****************.*****.*********96 PP

Sequence ? help Back to Top
Protein Sequence Length: 634 aa Download sequence
MDCVKLEQNC VENRQSAVAS SSSHSDASFG SSRRSPAAFS PVNSSPSQRR TSGPIRRAKG 60 GWTPQEDETL RNAVEAYKGR SWKKIAEYFP DRSEVQCLHR WQKVLNPELI KGPWTQEEDK 120 KIIELVAKYG PTKWSVIAKS LPGRIGKQCR ERWHNHLNPS IKKDAWTLEE ELALMNAHHI 180 HGNKWAEIAK VLPGRTDNSI KNHWNSSLKK KLEFYLATGK LPPVPKPGVQ NGIKDVTKAS 240 NGQAISCSNN DLVKSRSVSS EISDSSWKFE DHKGWFKSSS KQIVAAETLE VPLSESRNSD 300 AVGRKVQDTI NRSELRFTLG SCSSYNENYH ENKIAEALVQ PKTPDRNSLC YKPPELECLH 360 GSSALTLLDA CSSVQKAYDS LIVSSPAGYF TPSLVERKGS AEPSVEVILR NAADSFPLTP 420 SILRKRRSKT CAVLPPDRAA MADRIKTPES SCSREGDIAA DSEKSSNFRL CSSDCSHNEA 480 APCNANKFDF SPPYRLSSKR APLLKSVEKH LDFTSEEDKF NVNVDTMSLS IHGNSCSTDS 540 TLVRAQASKL NERKVGLEGL SEFVYCSSSS FRLSSLNKAL NENLEVFGIT GLMGIDIAQA 600 QWDAFLAVRK FIFTLSSFNP FLQDANFRHS GMHF

Sequence ? help Back to Top

Protein Sequence Length: 634 aa Download sequence

MDCVKLEQNC VENRQSAVAS SSSHSDASFG SSRRSPAAFS PVNSSPSQRR TSGPIRRAKG  60
GWTPQEDETL RNAVEAYKGR SWKKIAEYFP DRSEVQCLHR WQKVLNPELI KGPWTQEEDK  120
KIIELVAKYG PTKWSVIAKS LPGRIGKQCR ERWHNHLNPS IKKDAWTLEE ELALMNAHHI  180
HGNKWAEIAK VLPGRTDNSI KNHWNSSLKK KLEFYLATGK LPPVPKPGVQ NGIKDVTKAS  240
NGQAISCSNN DLVKSRSVSS EISDSSWKFE DHKGWFKSSS KQIVAAETLE VPLSESRNSD  300
AVGRKVQDTI NRSELRFTLG SCSSYNENYH ENKIAEALVQ PKTPDRNSLC YKPPELECLH  360
GSSALTLLDA CSSVQKAYDS LIVSSPAGYF TPSLVERKGS AEPSVEVILR NAADSFPLTP  420
SILRKRRSKT CAVLPPDRAA MADRIKTPES SCSREGDIAA DSEKSSNFRL CSSDCSHNEA  480
APCNANKFDF SPPYRLSSKR APLLKSVEKH LDFTSEEDKF NVNVDTMSLS IHGNSCSTDS  540
TLVRAQASKL NERKVGLEGL SEFVYCSSSS FRLSSLNKAL NENLEVFGIT GLMGIDIAQA  600
QWDAFLAVRK FIFTLSSFNP FLQDANFRHS GMHF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G02320.2	1e-127	MYB family protein

Link Out ? help Back to Top
Ensembl	Dr12734.1