PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dr12826.1

Organism

Dioscorea rotundata

Taxonomic ID

55577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Dioscoreales; Dioscoreaceae; Dioscorea

Family

C2H2

Protein Properties

Length: 252aa MW: 28855.6 Da PI: 9.2359

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dr12826.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	22.1	3.9e-07	74	96	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ Cg+ F+r nL+ H r H Dr12826.1 74 FTCEVCGREFRRDQNLQIHRRGH 96 89*******************88 PP

Sequence ? help Back to Top
Protein Sequence Length: 252 aa Download sequence
MVNPSWPLFS ASFLELVQYR ARLIEPPKLR RQVPSLPFRP SLHRHALIRC FDVPDPKAEV 60 VALSPRTLLT ASSFTCEVCG REFRRDQNLQ IHRRGHNLPW RATPSSKDAE VATTTKKRVY 120 XCPEESCVFH DPSRALSDLT GIKKHYSRKH GEKKWKCDKC SKWYAVRTDW KAHVRVCGTR 180 EYECACGTLF SRRDSFVVHR ASCESLGDND DGDERIDCKV RTNTVNNELL FPSLWGQSSS 240 ISGTKDEQKG IA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G50700.1	5e-78	C2H2 family protein

Link Out ? help Back to Top
Ensembl	Dr12826.1