PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dr12832.1

Organism

Dioscorea rotundata

Taxonomic ID

55577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Dioscoreales; Dioscoreaceae; Dioscorea

Family

Trihelix

Protein Properties

Length: 246aa MW: 30623.5 Da PI: 6.2271

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dr12832.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	72.2	9.5e-23	6	87	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 +W+++e+l+L+++r em++++ ++k++k lWe vs +mr f r+++qCk+kw+nl +r+k +++e++ +++p+ ++++ Dr12832.1 6 QWSHEETLELLKIRAEMDKSFMETKRNKVLWETVSMRMRLLAFPRTAEQCKSKWKNLLTRFKGSEAMEGEV----GRQFPFHEEMQ 87 7********************************************************************84....67899999997 PP
2	Myb_DNA-binding	22.5	2.7e-07	6	63	3	48
SS-HHHHHHHHHHHHHTTTT.........-HHHHHHHHT....TTS-HHHHHHHHHHHT CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg.........tWktIartmg....kgRtlkqcksrwqkyl 48 W+ eE + l++ +++ + W+t++ +m Rt++qcks+w ++l Dr12832.1 6 QWSHEETLELLKIRAEMDKSfmetkrnkvLWETVSMRMRllafP-RTAEQCKSKWKNLL 63 6***************99*****************966.**********86 PP

Sequence ? help Back to Top
Protein Sequence Length: 246 aa Download sequence
MERVPQWSHE ETLELLKIRA EMDKSFMETK RNKVLWETVS MRMRLLAFPR TAEQCKSKWK 60 NLLTRFKGSE AMEGEVGRQF PFHEEMQRIF SERMMMRLDN HEGKGKEVVE NESSDDDDHD 120 HDHEEYYDQE NEXKKEEEEK KKKKKKRKKR RRKNGDDEVV EVLKEILRRQ REMEERWMKE 180 LEEREEERRV WEEDWKRTME ELLVERMEME RRWREREEER KARDEAMADR RHSLLTAILT 240 KLSEKL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	140	146	KKKKKKK
2	140	148	KKKKKKKRK
3	140	149	KKKKKKKRKK
4	140	153	KKKKKKKRKKRRRK
5	141	147	KKKKKKK
6	141	149	KKKKKKKRK
7	142	148	KKKKKKK
8	142	150	KKKKKKKRK
9	143	149	KKKKKKK
10	143	151	KKKKKKKRK
11	143	148	KKKKRK
12	143	150	KKKKRKKR
13	144	150	KKKKKKK
14	144	152	KKKKKKKRK
15	145	151	KKKKKKK
16	145	153	KKKKKKKRK
17	145	149	KKRKK
18	146	152	KKKKKKK
19	147	153	KKKKKKK
20	147	154	KKKKRKKR
21	148	153	KKRRRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G38250.1	4e-38	Trihelix family protein

Link Out ? help Back to Top
Ensembl	Dr12832.1