PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dr12844.1

Organism

Dioscorea rotundata

Taxonomic ID

55577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Dioscoreales; Dioscoreaceae; Dioscorea

Family

MYB

Protein Properties

Length: 239aa MW: 26319.2 Da PI: 8.6703

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dr12844.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	57.3	3.6e-18	12	57	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +g+W++eEd l ++v+++G ++W+tI++ ++ gR++k+c++rw + Dr12844.1 12 KGSWSPEEDAALTRLVERHGARNWTTISAGVP-GRSGKSCRLRWCNQ 57 799***************************.*********985 PP
2	Myb_DNA-binding	55.4	1.4e-17	66	108	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 ++T+ Ed ++ a++++G++ W+tIar ++ gRt++ +k++w++ Dr12844.1 66 PFTPAEDAAILAAHAKHGNR-WATIARLLP-GRTDNAIKNHWNST 108 89****************.*****.*********986 PP

Sequence ? help Back to Top
Protein Sequence Length: 239 aa Download sequence
MEKSEEEAAR IKGSWSPEED AALTRLVERH GARNWTTISA GVPGRSGKSC RLRWCNQLSP 60 SVHHRPFTPA EDAAILAAHA KHGNRWATIA RLLPGRTDNA IKNHWNSTLR RRGLSQSQIA 120 PSTSNSLPSP PRSSVPETPE NSESASKRQC RREDEVDETG LCLSLSPPGG ADVAGSGVDA 180 AGGGEKRWQT EIKDVDFVKI MREMIADEVR IYINRFRSEN GDRSSLFDPN LKRATNGQD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G50060.1	3e-52	MYB family protein

Link Out ? help Back to Top
Ensembl	Dr12844.1