PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dr12911.1

Organism

Dioscorea rotundata

Taxonomic ID

55577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Dioscoreales; Dioscoreaceae; Dioscorea

Family

SBP

Protein Properties

Length: 206aa MW: 22588.6 Da PI: 9.8098

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dr12911.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	73.7	3.1e-23	148	197	1	50
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEE CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfh 50 +Cqv++C+adls ak+yhrrhkvCe hsk++++lv++++qrfCqqCsr+ Dr12911.1 148 MCQVDDCKADLSGAKDYHRRHKVCEPHSKTSKALVAKQMQRFCQQCSRYS 197 6***********************************************85 PP

Sequence ? help Back to Top
Protein Sequence Length: 206 aa Download sequence
MEREVGAQVA PPMFIHQPLA GRFHEPPVPK KRDLPWQNPS YLHNQLPPSA LNPNSNWNPR 60 MWDWDSVSFS AKPSETLSLG TANPPAKVAP EPEKKKKGDD GSKGVNEVGE NLTLKLGGGS 120 YAVEAAPVVR PSKRVRSGSP GSGGNYPMCQ VDDCKADLSG AKDYHRRHKV CEPHSKTSKA 180 LVAKQMQRFC QQCSRYSSSL FASILL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G20980.1	9e-49	SBP family protein

Link Out ? help Back to Top
Ensembl	Dr12911.1