PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dr12917.1
Organism
Dioscorea rotundata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Dioscoreales; Dioscoreaceae; Dioscorea
Family bHLH
Protein Properties Length: 251aa    MW: 27406.3 Da    PI: 9.7616
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dr12917.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.83.9e-13178223655
                HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
        HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                +++Er RR ri +++ +L+el+P+     +k  + a++L +AveYIk+Lq
  Dr12917.1 178 SIAERVRRTRISERMRKLQELVPNM----DKQTNTADMLDLAVEYIKDLQ 223
                689*********************7....688*****************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 251 aa     Download sequence    
MGPGGPGGLL RYRSAPSSLL GYNVMRSMGE GGLQQNRLNH QISFSSRQGS IMSQISEMGS  60
ESMGGSSPEE SNLGSGNGGG RCYIPGYPVG TWDDNAMLTD NFSGLKRTRE ADGKIIAGLN  120
QSEPQNGGLR SHVSGLTHQY SLPKTSSEMA XXEKFLQFQD AVPCKIRAKR GCATHPRSIA  180
ERVRRTRISE RMRKLQELVP NMDKQTNTAD MLDLAVEYIK DLQKQVKTIS ESRSSCTCSA  240
SKQKTYPNPS N
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42280.14e-59bHLH family protein