PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dr12928.1

Organism

Dioscorea rotundata

Taxonomic ID

55577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Dioscoreales; Dioscoreaceae; Dioscorea

Family

C2H2

Protein Properties

Length: 338aa MW: 38048.3 Da PI: 6.8394

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dr12928.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	16.2	2.9e-05	177	196	1	20
EEETTTTEEESSHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHi 20 ++Cp C k+F+r n++ H+ Dr12928.1 177 FSCPVCFKTFNRYNNMQMHM 196 89*****************9 PP
2	zf-C2H2	14.6	9.5e-05	261	283	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C +Cgk F + + ++H +++ Dr12928.1 261 FMCRKCGKAFAVRGDWRTHEKNC 283 89*****************9987 PP

Sequence ? help Back to Top
Protein Sequence Length: 338 aa Download sequence
MAEPFTNFHN KHFNYHSSSS SFFSTITPSP PSPPLREALP LLTLSPSNFN KDTSFNEAHK 60 NKVLFSKLEV NGDDHDDDDD DDDHGVSDGV TVALHIGLPT PSASDLISRI SSSSIQEHHH 120 ADDSKQVDDQ EENDDHEAVD HVVPLGYPSS SSPIGKLTKG QYWIPTPSQI LIGPTQFSCP 180 VCFKTFNRYN NMQMHMWGHG SQYRKGPESL RGIQPTAMLR LPCYCCAPEC RNNIDHPRSK 240 PLKDFRTLQT HYKRKHGIKP FMCRKCGKAF AVRGDWRTHE KNCGKLWYCI CGSDFKHKRS 300 LKDHVKAFGH GHAAYGIDVF DEDDDPSSEI EQGCNASH

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G57670.1	1e-134	C2H2 family protein

Link Out ? help Back to Top
Ensembl	Dr12928.1