PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dr12992.1

Organism

Dioscorea rotundata

Taxonomic ID

55577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Dioscoreales; Dioscoreaceae; Dioscorea

Family

SBP

Protein Properties

Length: 328aa MW: 36352.9 Da PI: 8.6691

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dr12992.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	133.9	5e-42	125	202	1	78
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +Cq+egC+adls ak+yhrrhkvCe+hska+vv++sgl+qrfCqqCsrfh lsefDe+krsCr+rLa+hn+rrrk+q+ Dr12992.1 125 RCQAEGCKADLSGAKHYHRRHKVCEFHSKATVVIASGLQQRFCQQCSRFHVLSEFDEAKRSCRKRLADHNRRRRKPQS 202 6**************************************************************************986 PP

Sequence ? help Back to Top
Protein Sequence Length: 328 aa Download sequence
MMNRSTTSND PFPSPFFPFA GLPSNNTTTW DPNPNPNPNL SMPSFNYSYP SSFIPNTPPY 60 LDSQAGLLPI NSFPIASDQM YTVKAEEVGL NLGHRTYFSS GDAAAIDRLF ARSRGVYSLA 120 HQPPRCQAEG CKADLSGAKH YHRRHKVCEF HSKATVVIAS GLQQRFCQQC SRFHVLSEFD 180 EAKRSCRKRL ADHNRRRRKP QSQSTNSSEN NNSNTTTTTT TTTTTTTSTE TISKTTNGPG 240 LSLGAGGVGG MMNQNQCSTF VSQQQTSSSN THMYHNSSLF WPSSNEASQS NGGDSEQQQQ 300 QKQQQQQQQQ QSNNLLHLGQ AMFELDFL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	183	200	KRSCRKRLADHNRRRRKP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G02065.1	5e-53	SBP family protein

Link Out ? help Back to Top
Ensembl	Dr12992.1