PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dr13017.1

Organism

Dioscorea rotundata

Taxonomic ID

55577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Dioscoreales; Dioscoreaceae; Dioscorea

Family

NAC

Protein Properties

Length: 400aa MW: 46442.5 Da PI: 9.3665

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dr13017.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	101.7	9.9e-32	94	218	3	128
NAM 3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvg 101 G+ F+Ptd +lv +yL kk+ +++++ +vi + diy++ePw+Lp ++ + ++++ y+F+ ++k++ +g+r r++ +gyW+ g +k+++ +g v Dr13017.1 94 TGLYFQPTDIDLVIRYLVKKILKQDFPR-DVIIDHDIYSTEPWNLPeNCSSPHDRRSYYFTLAKKSSLHGTRLVRQAGNGYWHMNGINKKIYY-NGLFVA 191 69***********************9.9999*********44555588899********************************.9999 PP NAM 102 lkktLvfykgrapkgektdWvmheyrl 128 + L++ +g + + +kt+Wvmheyr+ Dr13017.1 192 YTTALTYMHGMHGEKKKTKWVMHEYRI 218 *************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 400 aa Download sequence
MPGKASCPGG KRGRREARGN RTQIIDSTES SSRTLSYNYI RGFHLTRTVL IKPAFSHSVT 60 SAVTNKRNRA HYQLCSTVYI QVMATLEGHY IQITGLYFQP TDIDLVIRYL VKKILKQDFP 120 RDVIIDHDIY STEPWNLPEN CSSPHDRRSY YFTLAKKSSL HGTRLVRQAG NGYWHMNGIN 180 KKIYYNGLFV AYTTALTYMH GMHGEKKKTK WVMHEYRIDP SYLRLPPQEN ELVLCHIQQS 240 GRTTEPDNSK CETQQNAVIK KRLTDQEAAK ARENDNKYKA QQLALTAILD IHQESRNSFK 300 TSNNCEQIRP LPLTKKYEID EKSRERVDAI RCYEDTQQHA LTKKRPREDD VNEFNCEEDR 360 RQVKHVRPLS DAENIDLEDY KCSKNGTIIN CNTLNVFLSN

Sequence ? help Back to Top

Protein Sequence Length: 400 aa Download sequence

MPGKASCPGG KRGRREARGN RTQIIDSTES SSRTLSYNYI RGFHLTRTVL IKPAFSHSVT  60
SAVTNKRNRA HYQLCSTVYI QVMATLEGHY IQITGLYFQP TDIDLVIRYL VKKILKQDFP  120
RDVIIDHDIY STEPWNLPEN CSSPHDRRSY YFTLAKKSSL HGTRLVRQAG NGYWHMNGIN  180
KKIYYNGLFV AYTTALTYMH GMHGEKKKTK WVMHEYRIDP SYLRLPPQEN ELVLCHIQQS  240
GRTTEPDNSK CETQQNAVIK KRLTDQEAAK ARENDNKYKA QQLALTAILD IHQESRNSFK  300
TSNNCEQIRP LPLTKKYEID EKSRERVDAI RCYEDTQQHA LTKKRPREDD VNEFNCEEDR  360
RQVKHVRPLS DAENIDLEDY KCSKNGTIIN CNTLNVFLSN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G36160.1	2e-24	NAC family protein

Link Out ? help Back to Top
Ensembl	Dr13017.1