PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dr13082.1

Organism

Dioscorea rotundata

Taxonomic ID

55577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Dioscoreales; Dioscoreaceae; Dioscorea

Family

GRF

Protein Properties

Length: 409aa MW: 44775.9 Da PI: 7.1824

Description

GRF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dr13082.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRC	76.7	2.4e-24	158	201	1	44
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkske 44 d+epgrCrRtDGKkWRCsr+v++ +k+CErH+hrgr+rsrk++e Dr13082.1 158 DPEPGRCRRTDGKKWRCSREVVPSHKYCERHVHRGRNRSRKHVE 201 79****************************************97 PP
2	QLQ	51.4	3.4e-18	87	122	2	37
QLQ 2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 F+ aQ+q+L+ Q+l+yKy++a++PvP +L+++i+k Dr13082.1 87 LFSLAQWQELELQALIYKYMLAGAPVPLDLILPIRK 122 69********************************86 PP

Sequence ? help Back to Top
Protein Sequence Length: 409 aa Download sequence
MNMDMDSSSQ QWGSQQEPDQ HQNQAKVSKL QLMTDEQEIH ASALPLFAAT PINHTRTTST 60 PTLTPFPPDS SHTSRFSWGA GGGMVGLFSL AQWQELELQA LIYKYMLAGA PVPLDLILPI 120 RKSLLSAHPY YHHHQLQYQH FPTPAMLQSG YWGRCVIDPE PGRCRRTDGK KWRCSREVVP 180 SHKYCERHVH RGRNRSRKHV EVLAPTPTTT TKDDDGDDNN NNNNNNHFAP HHHHHHHQTS 240 RGTEDDGRQS YCTNYPDQNE GHVLRKFFNE RPRSQGQQES ISSASGGGGG GGSQQTLLSI 300 SIPGDVSLKL STGSSKDNGD GGGGAHHNAQ QSPANLNVNV NVNANANINR NWSEWGHGNE 360 NENNGETASG GPLAEALLRS STSTASPTSV LQKPCGISAS ETSSISISS

Sequence ? help Back to Top

Protein Sequence Length: 409 aa Download sequence

MNMDMDSSSQ QWGSQQEPDQ HQNQAKVSKL QLMTDEQEIH ASALPLFAAT PINHTRTTST  60
PTLTPFPPDS SHTSRFSWGA GGGMVGLFSL AQWQELELQA LIYKYMLAGA PVPLDLILPI  120
RKSLLSAHPY YHHHQLQYQH FPTPAMLQSG YWGRCVIDPE PGRCRRTDGK KWRCSREVVP  180
SHKYCERHVH RGRNRSRKHV EVLAPTPTTT TKDDDGDDNN NNNNNNHFAP HHHHHHHQTS  240
RGTEDDGRQS YCTNYPDQNE GHVLRKFFNE RPRSQGQQES ISSASGGGGG GGSQQTLLSI  300
SIPGDVSLKL STGSSKDNGD GGGGAHHNAQ QSPANLNVNV NVNANANINR NWSEWGHGNE  360
NENNGETASG GPLAEALLRS STSTASPTSV LQKPCGISAS ETSSISISS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G52910.1	2e-36	GRF family protein

Link Out ? help Back to Top
Ensembl	Dr13082.1