PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dr13108.1
Organism
Dioscorea rotundata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Dioscoreales; Dioscoreaceae; Dioscorea
Family C2H2
Protein Properties Length: 279aa    MW: 31483.2 Da    PI: 6.1852
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dr13108.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.81.9e-05219241123
                EEETTTTEEESSHHHHHHHHHHT CS
    zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                + C +CgksF  k + ++H +++
  Dr13108.1 219 FMCRKCGKSFAVKGDWRTHEKNC 241
                89*****************9987 PP
Sequence ? help Back to Top
Protein Sequence    Length: 279 aa     Download sequence    
MTYIPHFIIN FHSSCEEEEE EEEEKEDMDL GSDFPMAMND NLEGPFIEWL KPTQPPPSFS  60
SSPSSSTSTS SPSQDHAINR VSQCCLPLLS SFEEPKKVIK EEEDIDGEVN VALHIGLPGS  120
STSVDDGESI MSLDFSVEED DKEVENNNKK KMEVMXDDHE NRKGPESLKG TQPMGMLKLP  180
CYCCAHGCKN NINHPRAKPL KDFRTLQTHY KRKHGVKPFM CRKCGKSFAV KGDWRTHEKN  240
CGKLWYCTCG SNFKHKRSLK DHIRSFGMGH SPTCSPVSS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G20880.16e-70C2H2 family protein