PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dr13211.1
Organism
Dioscorea rotundata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Dioscoreales; Dioscoreaceae; Dioscorea
Family GATA
Protein Properties Length: 237aa    MW: 26143.5 Da    PI: 10.4904
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dr13211.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA54.81.2e-17128161134
       GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                C+ C+t+ TplWR+gp g+k+LCnaCG++yr+++
  Dr13211.1 128 CADCRTSMTPLWRKGPYGPKSLCNACGIRYRRRR 161
                *******************************987 PP
Sequence ? help Back to Top
Protein Sequence    Length: 237 aa     Download sequence    
MVSLFSPTVT ITSCYFLEIP IPFCRHWLRT CASRAGKRHK SPSIRLLFVA PXLSPSPLEN  60
PNPNPMLSTA MRTVSSSPWR SRGHLDSVIS GYDRIEKTYV RRRKMAENQP GSXVXMASSP  120
PSEELKTCAD CRTSMTPLWR KGPYGPKSLC NACGIRYRRR RPMANEGGGS KAKAMKSGKS  180
GGEEEEKKER MVLLLMQHRS KNATPEEIVG SGSGYGRQEA EAALLLMALS SGLVIPS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1157162YRRRRP
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49300.18e-17GATA family protein