PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dr13265.1

Organism

Dioscorea rotundata

Taxonomic ID

55577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Dioscoreales; Dioscoreaceae; Dioscorea

Family

LBD

Protein Properties

Length: 250aa MW: 26615.9 Da PI: 7.798

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dr13265.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	139.1	1.5e-43	38	137	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkee 100 +CaaCk+lrrkC++dCv+apyfp ++p+kf vh++FGasnv+kll++l++ +reda++sl+yeA++r+rdPvyG+vgvi+ lq+ql+ql+ e++ +k+e Dr13265.1 38 PCAACKFLRRKCQPDCVFAPYFPPDNPQKFIHVHRVFGASNVTKLLNELHPYQREDAVNSLAYEADMRLRDPVYGCVGVISVLQHQLRQLQIEISCAKSE 137 7*********************************************************************************************999887 PP

Sequence ? help Back to Top
Protein Sequence Length: 250 aa Download sequence
MAASSSSPMG STISIASSLA TTTTTTTSSS SSSSSSSPCA ACKFLRRKCQ PDCVFAPYFP 60 PDNPQKFIHV HRVFGASNVT KLLNELHPYQ REDAVNSLAY EADMRLRDPV YGCVGVISVL 120 QHQLRQLQIE ISCAKSELSK YQSTFGPPSF SSSNPPTTNL ININAQPTAM GSGIGHFFPT 180 SHAREPPQPH LMMMRNSYDT YDDSLVAAAM NASAASFVPF AGGGQFARPN AAAAADDRPG 240 IGPSEKPLCS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G65620.3	9e-60	LBD family protein

Link Out ? help Back to Top
Ensembl	Dr13265.1