PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dr13275.1

Organism

Dioscorea rotundata

Taxonomic ID

55577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Dioscoreales; Dioscoreaceae; Dioscorea

Family

MIKC_MADS

Protein Properties

Length: 260aa MW: 29694.3 Da PI: 8.4207

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dr13275.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	99	1.9e-31	26	76	1	51
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krien++nrqvtf+kRrng+lKKA+ELSvLCdaeva+i+fs++g+lyeys+ Dr13275.1 26 KRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSTRGRLYEYSN 76 79***********************************************95 PP
2	K-box	92.5	7.4e-31	100	200	9	100
K-box 9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkk.........ekelqeenkaLrkkle 99 e + ++++qqe++kL+ +i+ Lq+ +Rhl Ge+L+sL++keL+qLe++Le+++ +iRskK+ell+++ie++qk+ e elq++n++Lr+k++ Dr13275.1 100 IEVNSQQYYQQEATKLRHQIQILQNANRHLAGEGLSSLTIKELKQLESRLERGIARIRSKKHELLFAEIEYMQKRvtsyastfsELELQNDNTYLRSKIA 199 677889********************************************************************94444444444578888888888887 PP K-box 100 e 100 e Dr13275.1 200 E 200 5 PP

Sequence ? help Back to Top
Protein Sequence Length: 260 aa Download sequence
MALPGGNQDL RGEGREEMGR GKIEIKRIEN TTNRQVTFCK RRNGLLKKAY ELSVLCDAEV 60 ALIVFSTRGR LYEYSNDNIK STIERYKKAI ADNSNSGCII EVNSQQYYQQ EATKLRHQIQ 120 ILQNANRHLA GEGLSSLTIK ELKQLESRLE RGIARIRSKK HELLFAEIEY MQKRVTSYAS 180 TFSELELQND NTYLRSKIAE SERVQHTNAA SSGAEFNTLP AFDARNYYHI NMLEAAAHYS 240 HQQDQTALHL GYETKDDPAA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G09960.4	4e-96	MIKC_MADS family protein

Link Out ? help Back to Top
Ensembl	Dr13275.1