PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dr13338.1

Organism

Dioscorea rotundata

Taxonomic ID

55577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Dioscoreales; Dioscoreaceae; Dioscorea

Family

MYB

Protein Properties

Length: 228aa MW: 26372.4 Da PI: 9.9107

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dr13338.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	56.3	7.6e-18	22	67	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg W + Ede+l ++v+++G+ +W++Ia++++ gR++k+c++rw++ Dr13338.1 22 RGHWRPGEDEKLRQLVEKYGPQNWNSIAEKLQ-GRSGKSCRLRWFNQ 67 899***************************.*********996 PP
2	Myb_DNA-binding	61.1	2.3e-19	74	117	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 r ++T+eE+e+l+ a++ +G++ W++Iar ++ gRt++ +k++w+ Dr13338.1 74 RRPFTEEEEERLLAAHRIHGNK-WALIARLFP-GRTDNAVKNHWHV 117 679*****************.*****.*********96 PP

Sequence ? help Back to Top
Protein Sequence Length: 228 aa Download sequence
MELSGGGGSD DGKMTMTTMC SRGHWRPGED EKLRQLVEKY GPQNWNSIAE KLQGRSGKSC 60 RLRWFNQLDP RINRRPFTEE EEERLLAAHR IHGNKWALIA RLFPGRTDNA VKNHWHVIMA 120 RRQRERSKIY SKRIHDQHHH HLLESTSRSF GFYSGFGAVM QLNYKPNSSR XDGYVYEAMN 180 KFELFRIGDS SSGLLNLGSD KQKEQEDESL QQKKDAPFID FLGVGITS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G17950.1	4e-67	MYB family protein

Link Out ? help Back to Top
Ensembl	Dr13338.1