PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dr13348.1

Organism

Dioscorea rotundata

Taxonomic ID

55577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Dioscoreales; Dioscoreaceae; Dioscorea

Family

MIKC_MADS

Protein Properties

Length: 254aa MW: 29683.1 Da PI: 10.0569

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dr13348.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	92.9	1.6e-29	9	59	1	51
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krien++nrqvtfskRrngi+KKA E+SvLCda+v+v+ifss+gk+ ey+s Dr13348.1 9 KRIENSTNRQVTFSKRRNGIIKKAREISVLCDAQVSVVIFSSSGKMSEYCS 59 79***********************************************96 PP
2	K-box	44.4	7e-16	142	203	30	95
K-box 30 nLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLr 95 L++ Rhl+GedL+sL+ keL +e++L+++l+++R+k++++l++ l+k e l+eenk+L+ Dr13348.1 142 FLKSCGRHLKGEDLNSLNPKELIPIEEALQNGLTNVRDKQMDYLKM----LKKNESLLEEENKRLS 203 588899**********************************999876....5555555555555554 PP

Sequence ? help Back to Top
Protein Sequence Length: 254 aa Download sequence
MGRGKIEIKR IENSTNRQVT FSKRRNGIIK KAREISVLCD AQVSVVIFSS SGKMSEYCSP 60 STSLSKMLEK YQQNSGRRLW DAKHEVXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX 120 XXXXXXXXXX XXXXXXXXKK TFLKSCGRHL KGEDLNSLNP KELIPIEEAL QNGLTNVRDK 180 QMDYLKMLKK NESLLEEENK RLSYILQHHQ QMAMNGNVRD MELGYHQKDR DYPSQMPMAF 240 RVQPIQPNLQ EDKQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G20240.1	2e-41	MIKC_MADS family protein

Link Out ? help Back to Top
Ensembl	Dr13348.1