PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dr13455.1

Organism

Dioscorea rotundata

Taxonomic ID

55577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Dioscoreales; Dioscoreaceae; Dioscorea

Family

bHLH

Protein Properties

Length: 674aa MW: 73816.2 Da PI: 5.4664

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dr13455.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	12.7	0.00024	217	234	2	19
HHHHHHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsa 19 r +h++ E+rRR++iN++ Dr13455.1 217 RSKHSATEQRRRSKINDR 234 889*************97 PP
2	HLH	24.3	5.6e-08	250	281	20	55
HHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 20 feeLrellPkaskapskKlsKaeiLekAveYIksLq 55 f+ Lrel+P++ ++K +Ka+ L +++eYI+ Lq Dr13455.1 250 FQILRELIPHS----DQKRDKASFLLEVIEYIRFLQ 281 99******9....9*****************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 674 aa Download sequence
MWMELQGKKA THDFLSLYNK DSSFQLHDPR PPPPHPPPSS QGLYLKTHDF LQPFEKSHAR 60 ESPIDSAAAG PTERPPDHVL PGGVGTYTIG HVSGLASIRS SIKHEQVTCV PSARAAESSG 120 HYAGVPFSLW EEPGANKDPT GSRGQWPPAI VARRIGAFGS ISSSRQQGVQ ERKRPMETVS 180 RSSDDDEEFG KRDGSSSHKG ELSGKVERRS SDPSTPRSKH SATEQRRRSK INDRQVRLFC 240 VSLFLFVCLF QILRELIPHS DQKRDKASFL LEVIEYIRFL QEKAQKCEAS YPGWNQESAW 300 EKAYFRSIWK NARNNNQGPA DGPNDPSQVI KGGSVPAAFM FSGRFHDNSI TVAPVMSNSQ 360 NPSESDNLMA DISYKTIENS PVAAVHVPLQ PNLYATVGNE TAAAQNQQRM LSDGDNFVDQ 420 SQSQNDCAVN SDMLNEQEEL TVDEGTISVS SVYSQGLLTS LTEALQSSGV DLSQASISVR 480 INFGKRVTDR RPGMGNAKEH GDGHRALGHS RMGSTGGEEA ERMPKRRRSE NSISNNGESG 540 ELAKQARSRA IDKRNKKKEE DSAIQAHNKI ESNTTTRIEG ALKEIGEDKK DIKNNGLHSV 600 ESDVAAEGGG VSDNSEVESK EEEESSEGGS AEEANSGEKR LEDELEGGEL GEDVLPILNA 660 VEEGVEDNIL AIRF

Sequence ? help Back to Top

Protein Sequence Length: 674 aa Download sequence

MWMELQGKKA THDFLSLYNK DSSFQLHDPR PPPPHPPPSS QGLYLKTHDF LQPFEKSHAR  60
ESPIDSAAAG PTERPPDHVL PGGVGTYTIG HVSGLASIRS SIKHEQVTCV PSARAAESSG  120
HYAGVPFSLW EEPGANKDPT GSRGQWPPAI VARRIGAFGS ISSSRQQGVQ ERKRPMETVS  180
RSSDDDEEFG KRDGSSSHKG ELSGKVERRS SDPSTPRSKH SATEQRRRSK INDRQVRLFC  240
VSLFLFVCLF QILRELIPHS DQKRDKASFL LEVIEYIRFL QEKAQKCEAS YPGWNQESAW  300
EKAYFRSIWK NARNNNQGPA DGPNDPSQVI KGGSVPAAFM FSGRFHDNSI TVAPVMSNSQ  360
NPSESDNLMA DISYKTIENS PVAAVHVPLQ PNLYATVGNE TAAAQNQQRM LSDGDNFVDQ  420
SQSQNDCAVN SDMLNEQEEL TVDEGTISVS SVYSQGLLTS LTEALQSSGV DLSQASISVR  480
INFGKRVTDR RPGMGNAKEH GDGHRALGHS RMGSTGGEEA ERMPKRRRSE NSISNNGESG  540
ELAKQARSRA IDKRNKKKEE DSAIQAHNKI ESNTTTRIEG ALKEIGEDKK DIKNNGLHSV  600
ESDVAAEGGG VSDNSEVESK EEEESSEGGS AEEANSGEKR LEDELEGGEL GEDVLPILNA  660
VEEGVEDNIL AIRF

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	553	593	KRNKKKEEDSAIQAHNKIESNTTTRIEGALKEIGEDKKDIK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69010.1	8e-55	bHLH family protein

Link Out ? help Back to Top
Ensembl	Dr13455.1