PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dr13531.1

Organism

Dioscorea rotundata

Taxonomic ID

55577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Dioscoreales; Dioscoreaceae; Dioscorea

Family

C2H2

Protein Properties

Length: 351aa MW: 38965 Da PI: 9.2145

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dr13531.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	15.1	6.7e-05	100	115	1	16
EEETTTTEEESSHHHH CS zf-C2H2 1 ykCpdCgksFsrksnL 16 +kC++C+k+Fs+k+++ Dr13531.1 100 FKCEICNKTFSSKDMY 115 89***********986 PP

Sequence ? help Back to Top
Protein Sequence Length: 351 aa Download sequence
MEARSMASSI PLTLHPRXPS PSLSFRRFYA RPPPRNLHPF LRFRASSSVV AAEPAVLQET 60 QVQSNKSSVF DFLSCPICYE PLTRKGPSGL NLPAIYRSGF KCEICNKTFS SKDMYLDLTV 120 TSGTKEYNEF KPARTELFRS PLVSFLYERG WRQNFDRSGF PGPDEEFNMA QEFFKPVAGG 180 LLVDVSCGSG LFSRKFAKSG TYSSVIALDF SENMLRQCYE FIKNDESILA ANFALVRADV 240 SRLPFASGSV DAVHAGAALH CWPSPSNAVA EISRVLRSGG VFVGTTFLST PVNSPFASAT 300 LRPLRQIFGQ VTNSYSYFTA KEIEDLCKTC GLVXYTSKIQ RAFIMFTAQK P

Sequence ? help Back to Top

Protein Sequence Length: 351 aa Download sequence

MEARSMASSI PLTLHPRXPS PSLSFRRFYA RPPPRNLHPF LRFRASSSVV AAEPAVLQET  60
QVQSNKSSVF DFLSCPICYE PLTRKGPSGL NLPAIYRSGF KCEICNKTFS SKDMYLDLTV  120
TSGTKEYNEF KPARTELFRS PLVSFLYERG WRQNFDRSGF PGPDEEFNMA QEFFKPVAGG  180
LLVDVSCGSG LFSRKFAKSG TYSSVIALDF SENMLRQCYE FIKNDESILA ANFALVRADV  240
SRLPFASGSV DAVHAGAALH CWPSPSNAVA EISRVLRSGG VFVGTTFLST PVNSPFASAT  300
LRPLRQIFGQ VTNSYSYFTA KEIEDLCKTC GLVXYTSKIQ RAFIMFTAQK P

Link Out ? help Back to Top
Ensembl	Dr13531.1