PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dr13862.1

Organism

Dioscorea rotundata

Taxonomic ID

55577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Dioscoreales; Dioscoreaceae; Dioscorea

Family

C2H2

Protein Properties

Length: 1518aa MW: 169144 Da PI: 8.7306

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dr13862.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12.1	0.0006	1427	1449	3	23
ET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 3 Cp..dCgksFsrksnLkrHirtH 23 Cp Cgk F ++ +L++H ++H Dr13862.1 1427 CPvkGCGKKFFSHKYLVQHRKVH 1449 9999*****************99 PP
2	zf-C2H2	11.8	0.00075	1485	1511	1	23
EEET..TTTEEESSHHHHHHHHHH..T CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirt..H 23 y+C Cg++F+ s++ rH r+ H Dr13862.1 1485 YVCReaGCGQTFRFVSDFSRHKRKtgH 1511 99********************99666 PP

Sequence ? help Back to Top
Protein Sequence Length: 1518 aa Download sequence
MNNSKLFLTL FFFFFSSSSL NLIHSFDFEA GDHTGWKVPP SNNTLIYNQW ASKNRFTVGD 60 TINFRYKKDS VMVVSSEEEY KTCNSSHPLF FSNNGRTEFK LERSGMFYFI SGVLSHCEKG 120 QKMMVKVIVH DDNDQSPTRS PSNDTYSDPD YSTAVKLSSS FLLFLKEDKL RKTPFFLHLL 180 RLLLHPPPMA ANSQAEPPPL EVLSWLKSLP MAPEYHPTLA EFQDPIAFIL KIEKEASAYG 240 ICKIVPPVPP AAKKTTMANL NRSFAARDPN PKKPPTFTTR QQQIGFCPRR PRPVQKPVWQ 300 SGEQYTLQQF EAKAKQFEKT HLRKLGKRGL GLSPLEIETL FWKACADKPF SVEYANDMPG 360 SGFAPLASGK KWREDEAANV GETAWNMRGV SRAKGSLLRF MKEEIPGVTS PMVYIAMMFS 420 WFAWHVEDHD LHSLNYLHFG AGKTWYGVPR DARLALEDVI RVHGYCGEVN PLVTFAILTE 480 KTTVMSPEIL VGAGIPCCRL VQNAGEFVVT FPGAYHTGFS HGFNCGEAAN IATPQWLRFA 540 KEAAVRRAST NFPPMVSHFQ LLYALALSLG SRMPMVCCTE PRSSRLKDKM KGEGEVMVKT 600 TFVQSVAQNN NLLSILLEKG STCVVLPRKT AEISLCSTSL VKPQLKVKPR LSLGLCSRQE 660 GLEASGILPS DDAMPDRNMD TVHSSGFCLV NESPVSAFQG KKLVPASFSK YETSDFCSSS 720 SESQYVEGGK ESTIQGDGLL EQGLLSCVTC GILSFSCVAV IQPREKAARY LMASDCSVFS 780 DHIVASGDTS ETANVPNQNT GNYDLSRSGS MEKHFHDGSS DSLDHCNTHL LLSGPSTGAF 840 SGTANPKSIS ALDLLASAYG DLSEPEDEVL DNKPGHEDGN EIRNLSLSSD LTQKSMSSTK 900 VLNGNLESHL IEPYCQTETN DNYRNSSSGV SNYSELPVQD SGRIGGSDDS NDSPDKICTP 960 KLEFSRWNQP ESPNMLVSLE DEMAPSDSLI AYSTGINGKK TDGSCHKEAD VPEHHNSCDP 1020 VAPIRCTKGE MKLTNYSAKI QNSDVPVMQR SDKDSSRMHV FCLEHAVEVE KQLRPFGGVH 1080 IMLLCHPVSV SLLWTFLADY PRIEAEAKLL ATELGSDIVW KDIPFQEAKK EDQLRIRSAM 1140 EDEESIPMNS DWAVKMGINL YYSANLSKSP LYCKQMPYNA VIYKAFGCNS AGNSPVKLKA 1200 TGRRPGRQKK IIVAGKWCGK VWMSNQVHPH LALRQDTHEQ EFADKIYSGG SDEKLKIEKD 1260 TEVTEQAARP SRNSSSTAAA RKSGKKRKKT LNKASIKKAR HTATGDGSLE VAKENSSAQC 1320 SRLLRSRIKH NVTPLKNENT SQRKLNLDDE ADGGPSTRLR RRPSKTEVTK SKPRIEKHIK 1380 KKKGNKVQEQ NSAINKEEEL DYPCDVEGCS MSFGTKQDLS LHKRNICPVK GCGKKFFSHK 1440 YLVQHRKVHL DDRPLKCPWK GCKMTFKWAW ARTEHIRVHT GDRPYVCREA GCGQTFRFVS 1500 DFSRHKRKTG HSVKKVRR

Sequence ? help Back to Top

Protein Sequence Length: 1518 aa Download sequence

MNNSKLFLTL FFFFFSSSSL NLIHSFDFEA GDHTGWKVPP SNNTLIYNQW ASKNRFTVGD  60
TINFRYKKDS VMVVSSEEEY KTCNSSHPLF FSNNGRTEFK LERSGMFYFI SGVLSHCEKG  120
QKMMVKVIVH DDNDQSPTRS PSNDTYSDPD YSTAVKLSSS FLLFLKEDKL RKTPFFLHLL  180
RLLLHPPPMA ANSQAEPPPL EVLSWLKSLP MAPEYHPTLA EFQDPIAFIL KIEKEASAYG  240
ICKIVPPVPP AAKKTTMANL NRSFAARDPN PKKPPTFTTR QQQIGFCPRR PRPVQKPVWQ  300
SGEQYTLQQF EAKAKQFEKT HLRKLGKRGL GLSPLEIETL FWKACADKPF SVEYANDMPG  360
SGFAPLASGK KWREDEAANV GETAWNMRGV SRAKGSLLRF MKEEIPGVTS PMVYIAMMFS  420
WFAWHVEDHD LHSLNYLHFG AGKTWYGVPR DARLALEDVI RVHGYCGEVN PLVTFAILTE  480
KTTVMSPEIL VGAGIPCCRL VQNAGEFVVT FPGAYHTGFS HGFNCGEAAN IATPQWLRFA  540
KEAAVRRAST NFPPMVSHFQ LLYALALSLG SRMPMVCCTE PRSSRLKDKM KGEGEVMVKT  600
TFVQSVAQNN NLLSILLEKG STCVVLPRKT AEISLCSTSL VKPQLKVKPR LSLGLCSRQE  660
GLEASGILPS DDAMPDRNMD TVHSSGFCLV NESPVSAFQG KKLVPASFSK YETSDFCSSS  720
SESQYVEGGK ESTIQGDGLL EQGLLSCVTC GILSFSCVAV IQPREKAARY LMASDCSVFS  780
DHIVASGDTS ETANVPNQNT GNYDLSRSGS MEKHFHDGSS DSLDHCNTHL LLSGPSTGAF  840
SGTANPKSIS ALDLLASAYG DLSEPEDEVL DNKPGHEDGN EIRNLSLSSD LTQKSMSSTK  900
VLNGNLESHL IEPYCQTETN DNYRNSSSGV SNYSELPVQD SGRIGGSDDS NDSPDKICTP  960
KLEFSRWNQP ESPNMLVSLE DEMAPSDSLI AYSTGINGKK TDGSCHKEAD VPEHHNSCDP  1020
VAPIRCTKGE MKLTNYSAKI QNSDVPVMQR SDKDSSRMHV FCLEHAVEVE KQLRPFGGVH  1080
IMLLCHPVSV SLLWTFLADY PRIEAEAKLL ATELGSDIVW KDIPFQEAKK EDQLRIRSAM  1140
EDEESIPMNS DWAVKMGINL YYSANLSKSP LYCKQMPYNA VIYKAFGCNS AGNSPVKLKA  1200
TGRRPGRQKK IIVAGKWCGK VWMSNQVHPH LALRQDTHEQ EFADKIYSGG SDEKLKIEKD  1260
TEVTEQAARP SRNSSSTAAA RKSGKKRKKT LNKASIKKAR HTATGDGSLE VAKENSSAQC  1320
SRLLRSRIKH NVTPLKNENT SQRKLNLDDE ADGGPSTRLR RRPSKTEVTK SKPRIEKHIK  1380
KKKGNKVQEQ NSAINKEEEL DYPCDVEGCS MSFGTKQDLS LHKRNICPVK GCGKKFFSHK  1440
YLVQHRKVHL DDRPLKCPWK GCKMTFKWAW ARTEHIRVHT GDRPYVCREA GCGQTFRFVS  1500
DFSRHKRKTG HSVKKVRR

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	1285	1289	KKRKK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G48430.1	0.0	C2H2 family protein

Link Out ? help Back to Top
Ensembl	Dr13862.1