PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dr14027.1

Organism

Dioscorea rotundata

Taxonomic ID

55577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Dioscoreales; Dioscoreaceae; Dioscorea

Family

CO-like

Protein Properties

Length: 239aa MW: 25985.1 Da PI: 6.6696

Description

CO-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dr14027.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	19	2.9e-06	8	46	5	37
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg......H 37 C+ + +++ +C ++ lC +C ++ H+ H Dr14027.1 8 ACDYCXGQRAVVYCSPDSARLCLSCDVHVHSAnalasrH 46 6***************************99545555555 PP
2	CCT	25.7	4.1e-10	205	238	1	34
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRp 34 R +a++RY++K+k+RkF K +Y +RK+ e+++ Dr14027.1 205 RTEAKMRYNQKKKSRKFGKNLKYGTRKVKSEKMK 238 899************************9999885 PP

Sequence ? help Back to Top
Protein Sequence Length: 239 aa Download sequence
MDAAAAAACD YCXGQRAVVY CSPDSARLCL SCDVHVHSAN ALASRHVRSL ICDRCLVQPA 60 ITWCMDEGAI LCHDCDCCAF SFACSSLLHR RQPVGCYSGC PSSSDLLSLW SSVLNFHCSS 120 DDVCGLYPFQ DASLDFAADN LVEGVLDNSD QGMMINGNGI QHVGSISISN HTGESSAVDY 180 QDCGVSPMLL NNESSTLDAN YPQARTEAKM RYNQKKKSRK FGKNLKYGTR KVKSEKMKT

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G48250.1	5e-25	CO-like family protein

Link Out ? help Back to Top
Ensembl	Dr14027.1