PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dr14128.1

Organism

Dioscorea rotundata

Taxonomic ID

55577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Dioscoreales; Dioscoreaceae; Dioscorea

Family

bHLH

Protein Properties

Length: 242aa MW: 26786.9 Da PI: 7.5055

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dr14128.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	33.2	9.7e-11	125	172	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i ++ L++l+P + +k Ka++L + ++YI+ Lq Dr14128.1 125 SHSLAERARREKISARMKILQDLVPGC----NKVIGKASVLDEIINYIQALQ 172 8***********************9....677***************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 242 aa Download sequence
MDLAAREMWP FPMLGGARTV DEYTVTEHSG GGGGGRTRRK RKESVSEDES SKLVSTSSGN 60 ELTDCEGKRA KKIMKSRVEN DNSKTETEAS SGNCDKPVDQ NAQSSEPPKQ DYIHVRARRG 120 QATDSHSLAE RARREKISAR MKILQDLVPG CNKVIGKASV LDEIINYIQA LQRQVEFLSM 180 KLEAVTSRMN SSIESFPPKD FGPQAYDTAP SLPFGTQARE YDQGSTPEWL HMQVGGAFER 240 VT

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	38	43	RRKRKE
2	38	75	RRKRKESVSEDESSKLVSTSSGNELTDCEGKRAKKIMK
3	39	76	RRKRKESVSEDESSKLVSTSSGNELTDCEGKRAKKIMK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G59640.1	8e-78	bHLH family protein

Link Out ? help Back to Top
Ensembl	Dr14128.1