PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dr14654.1

Organism

Dioscorea rotundata

Taxonomic ID

55577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Dioscoreales; Dioscoreaceae; Dioscorea

Family

HD-ZIP

Protein Properties

Length: 237aa MW: 26469.1 Da PI: 7.3412

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dr14654.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	59.1	7.2e-19	90	144	2	56
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +k+ ++tkeq Le+ F+++++++ ++++ LAk+l+L rqV vWFqNrRa+ k Dr14654.1 90 KKKLRLTKEQSSLLEDRFKEHSTLNPKQKQALAKQLNLRPRQVEVWFQNRRARTK 144 788899***********************************************98 PP
2	HD-ZIP_I/II	124.7	4.2e-40	90	178	1	89
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLre 89 +kk+rl+keq++lLE+ F+e+++L+p++K++la++L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lkr+++al++en+rL+ke +eL++ Dr14654.1 90 KKKLRLTKEQSSLLEDRFKEHSTLNPKQKQALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEVLKRCCEALTDENRRLKKELQELKS 178 59*************************************************************************************94 PP

Sequence ? help Back to Top
Protein Sequence Length: 237 aa Download sequence
MDHQEEEDIG LVLGLGFGDK KACMFNKDHC RKDGKRSAGA LLSLSLFDEA FPMRVKNEME 60 LGCGGGGDDQ EVVMESVSKT SDEDDDGGSK KKLRLTKEQS SLLEDRFKEH STLNPKQKQA 120 LAKQLNLRPR QVEVWFQNRR ARTKLKQTEV DCEVLKRCCE ALTDENRRLK KELQELKSVN 180 LAMPPLYMQL PAATLTICPS CERLAGADDN SKGGTGAFVI TPKTHFYNPS FSHSAAC

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	89	95	SKKKLRL
2	139	147	RRARTKLKQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37790.1	2e-69	HD-ZIP family protein

Link Out ? help Back to Top
Ensembl	Dr14654.1