PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dr14661.1

Organism

Dioscorea rotundata

Taxonomic ID

55577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Dioscoreales; Dioscoreaceae; Dioscorea

Family

GRF

Protein Properties

Length: 603aa MW: 64756.7 Da PI: 8.1938

Description

GRF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dr14661.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRC	74.2	1.4e-23	236	280	1	45
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 d+epgrCrRtDGKkWRCsr+++++ k+CErH++rgr+rsrk++e Dr14661.1 236 DPEPGRCRRTDGKKWRCSRDAVADGKYCERHMNRGRHRSRKHVEG 280 79****************************************986 PP
2	QLQ	59	1.4e-20	166	202	1	37
QLQ 1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 ++FT++Q+++L++Q+l+yKy+ an+P+P++Ll +i++ Dr14661.1 166 GPFTPSQWMELEHQALIYKYIDANAPIPSNLLIPIRR 202 59*********************************86 PP

Sequence ? help Back to Top
Protein Sequence Length: 603 aa Download sequence
MEFGGMVGME GLVVGGSSEA AGSSSCGFFP SSLASSEVET RAQKGIFANG NGFFKHGRTC 60 GLEGHDLRTL KMARTSSSAS LLRSSFHDAG EHMLSFSSPK SDALLLTSEG TLPFYHLPSS 120 SSASSSSSSS SSSSSSSTPA YFRTAGLSSG NTSLMNMHGV LAGVRGPFTP SQWMELEHQA 180 LIYKYIDANA PIPSNLLIPI RRSLYQSGFP PFSAGSQRSN PLGWGSFHLG FTGNADPEPG 240 RCRRTDGKKW RCSRDAVADG KYCERHMNRG RHRSRKHVEG QNGHAAKAMP IIAPSPSASA 300 VPGGGSSNSL NISQQHTRNF QSSVADPSSA QFNRMLMSKE NVNGGVPDSQ GFSMLTSVNP 360 KAMDNSFSIS KQQNPFEGAS SRTDFGLFST DALLNTPRNS YSDHMELKDQ QTQAHPLRHF 420 FDDWPKNRSD RSTITWPEVE ETHSNKTQLS ISIPMSDFSS SSSSPNHEKL TLSPLKLSRE 480 FDPIPMGLSV GVLNEASQRQ ASWIPISWES SMGGPLGEVL TNTNNTTPKE CSKNYSSSSL 540 NLLTDGWDSS PRMVSSPTGV LQKTTFGSLS SSTGSSPRTE SHKAHDEDLL GANLVHASTI 600 PSL

Sequence ? help Back to Top

Protein Sequence Length: 603 aa Download sequence

MEFGGMVGME GLVVGGSSEA AGSSSCGFFP SSLASSEVET RAQKGIFANG NGFFKHGRTC  60
GLEGHDLRTL KMARTSSSAS LLRSSFHDAG EHMLSFSSPK SDALLLTSEG TLPFYHLPSS  120
SSASSSSSSS SSSSSSSTPA YFRTAGLSSG NTSLMNMHGV LAGVRGPFTP SQWMELEHQA  180
LIYKYIDANA PIPSNLLIPI RRSLYQSGFP PFSAGSQRSN PLGWGSFHLG FTGNADPEPG  240
RCRRTDGKKW RCSRDAVADG KYCERHMNRG RHRSRKHVEG QNGHAAKAMP IIAPSPSASA  300
VPGGGSSNSL NISQQHTRNF QSSVADPSSA QFNRMLMSKE NVNGGVPDSQ GFSMLTSVNP  360
KAMDNSFSIS KQQNPFEGAS SRTDFGLFST DALLNTPRNS YSDHMELKDQ QTQAHPLRHF  420
FDDWPKNRSD RSTITWPEVE ETHSNKTQLS ISIPMSDFSS SSSSPNHEKL TLSPLKLSRE  480
FDPIPMGLSV GVLNEASQRQ ASWIPISWES SMGGPLGEVL TNTNNTTPKE CSKNYSSSSL  540
NLLTDGWDSS PRMVSSPTGV LQKTTFGSLS SSTGSSPRTE SHKAHDEDLL GANLVHASTI  600
PSL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G22840.1	8e-74	GRF family protein

Link Out ? help Back to Top
Ensembl	Dr14661.1