PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dr14863.1

Organism

Dioscorea rotundata

Taxonomic ID

55577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Dioscoreales; Dioscoreaceae; Dioscorea

Family

SBP

Protein Properties

Length: 472aa MW: 52144.8 Da PI: 7.883

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dr14863.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	128.7	2.2e-40	193	268	2	77
-SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS SBP 2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 CqvegC+ dls+akeyhr+h+vCe hsk+p+v+v+g+e+rfCqqCsrfhelsefD +krsCrrrL++hn+rrrk+ Dr14863.1 193 CQVEGCRFDLSTAKEYHRKHRVCESHSKCPKVIVAGQERRFCQQCSRFHELSEFDLKKRSCRRRLSDHNARRRKPP 268 **************************************************************************86 PP

Sequence ? help Back to Top
Protein Sequence Length: 472 aa Download sequence
MSMDWNLKSP TQWDWENLGL NFGDKECENP RGEQESQWKI EGDRAITNGS VYLSGIGAYS 60 GSAYGSGCSP TGSISASIGS SSMPQTKITE FDYQAVDWSF QKPXMTKEFT RARAIDASPC 120 VVSTACQGEQ LIGLKLGKRT YFEDVCTGSN NGSSSSSSSS SSLSSSSLTS VIPAVTLSKK 180 SKVSLHSTQT FYCQVEGCRF DLSTAKEYHR KHRVCESHSK CPKVIVAGQE RRFCQQCSRF 240 HELSEFDLKK RSCRRRLSDH NARRRKPPPD LISFNSGRFS PSFFDDQCHM NPIWNKACPT 300 MNSTWDASLD FKLMPTRVSW IKSAKTGTFN EDLQCLSFRL SNSCPSLRND LDRLLPFKGA 360 TAEALIQGPG ASDVSPNSDG ALDLQRALSL LSNDPRSSSS SEIRSNSLDA TAQQAIHQLY 420 QDGEEALIQQ AKMQLPFNRH VNVNGGQYDQ LLRASSSSVE AEAALYDSSQ IR

Sequence ? help Back to Top

Protein Sequence Length: 472 aa Download sequence

MSMDWNLKSP TQWDWENLGL NFGDKECENP RGEQESQWKI EGDRAITNGS VYLSGIGAYS  60
GSAYGSGCSP TGSISASIGS SSMPQTKITE FDYQAVDWSF QKPXMTKEFT RARAIDASPC  120
VVSTACQGEQ LIGLKLGKRT YFEDVCTGSN NGSSSSSSSS SSLSSSSLTS VIPAVTLSKK  180
SKVSLHSTQT FYCQVEGCRF DLSTAKEYHR KHRVCESHSK CPKVIVAGQE RRFCQQCSRF  240
HELSEFDLKK RSCRRRLSDH NARRRKPPPD LISFNSGRFS PSFFDDQCHM NPIWNKACPT  300
MNSTWDASLD FKLMPTRVSW IKSAKTGTFN EDLQCLSFRL SNSCPSLRND LDRLLPFKGA  360
TAEALIQGPG ASDVSPNSDG ALDLQRALSL LSNDPRSSSS SEIRSNSLDA TAQQAIHQLY  420
QDGEEALIQQ AKMQLPFNRH VNVNGGQYDQ LLRASSSSVE AEAALYDSSQ IR

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	249	266	KKRSCRRRLSDHNARRRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G43270.1	8e-52	SBP family protein

Link Out ? help Back to Top
Ensembl	Dr14863.1