PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dr15031.1

Organism

Dioscorea rotundata

Taxonomic ID

55577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Dioscoreales; Dioscoreaceae; Dioscorea

Family

LSD

Protein Properties

Length: 151aa MW: 15752.4 Da PI: 8.0712

Description

LSD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dr15031.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-LSD1	37.5	3.9e-12	28	52	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 C+gCr+lL YP GA+sV+Ca+C V Dr15031.1 28 CSGCRNLLLYPVGATSVCCAVCSVV 52 **********************887 PP
2	zf-LSD1	46.7	5.1e-15	67	91	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 CggC+tlL+Y rGA+sV+C++C+tV Dr15031.1 67 CGGCHTLLMYIRGATSVQCSCCHTV 91 ************************9 PP
3	zf-LSD1	41.8	1.8e-13	112	136	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 Cg+Cr lL+Y +GA+sV+Ca+C++V Dr15031.1 112 CGNCRMLLMYQYGARSVKCAVCNFV 136 ***********************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 151 aa Download sequence
MPVPLAPYPT PPVPFTPPNG TTQSQLVCSG CRNLLLYPVG ATSVCCAVCS VVTNVPPPGT 60 EMAQLVCGGC HTLLMYIRGA TSVQCSCCHT VNLALEVRTA QIAANQVAHV NCGNCRMLLM 120 YQYGARSVKC AVCNFVTSVG ASPSSEQKLS G

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G32540.1	4e-63	LSD family protein

Link Out ? help Back to Top
Ensembl	Dr15031.1