PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dr15328.1
Organism
Dioscorea rotundata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Dioscoreales; Dioscoreaceae; Dioscorea
Family LBD
Protein Properties Length: 224aa    MW: 24479.1 Da    PI: 8.3056
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dr15328.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260120.96.9e-38131131100
     DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallke 99 
                +C aCk+lrrkC++dC++apyf  eq p++fa++hk+FGasnv+kll ++p  er +a+ ++ yeA+ar+rdPvyG+v++i++lq+q++ l+a++ ++k 
  Dr15328.1  13 PCGACKFLRRKCTRDCIFAPYFNCEQgPARFAAIHKVFGASNVSKLLLHVPVPERCEAVVTISYEAQARIRDPVYGCVSHIFALQHQVALLQAQVMQMKV 112
                7*********************887779*****************************************************************9988775 PP

     DUF260 100 e 100
                +
  Dr15328.1 113 Q 113
                5 PP
Sequence ? help Back to Top
Protein Sequence    Length: 224 aa     Download sequence    
MASSGTGTTT SSPCGACKFL RRKCTRDCIF APYFNCEQGP ARFAAIHKVF GASNVSKLLL  60
HVPVPERCEA VVTISYEAQA RIRDPVYGCV SHIFALQHQV ALLQAQVMQM KVQLAQKTTA  120
MTATTMASRS SSSLSSENHR HHYWQGINNG DINSETFGHP NYVCMQMQSM SPQSSLDSCC  180
ADGILMPSCL SSEGVVTTQL CTKRKAPFDE LGELQALALR MMKS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42430.17e-49LBD family protein