PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dr15348.1

Organism

Dioscorea rotundata

Taxonomic ID

55577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Dioscoreales; Dioscoreaceae; Dioscorea

Family

MYB

Protein Properties

Length: 252aa MW: 28243 Da PI: 8.0772

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dr15348.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	50.5	4.9e-16	14	62	1	48
TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48 +g+W++eEd +l++++++ G+g +W + +++ g++R++k+c++rw++yl Dr15348.1 14 KGPWSPEEDSKLKEYIEKNGTGgNWIALPHKAGLKRCGKSCRLRWLNYL 62 79*********************************************97 PP
2	Myb_DNA-binding	41.4	3.4e-13	69	111	2	46
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 g +++eEd ++ +++ G++ W+ Ia+ ++ gRt++++k++w++ Dr15348.1 69 GEFSPEEDNIIFTLFATIGSR-WSIIAAQLP-GRTDNDIKNYWNT 111 78*****************.*****.*********97 PP

Sequence ? help Back to Top
Protein Sequence Length: 252 aa Download sequence
MGRAPCCDKA NVKKGPWSPE EDSKLKEYIE KNGTGGNWIA LPHKAGLKRC GKSCRLRWLN 60 YLRPNIKHGE FSPEEDNIIF TLFATIGSRW SIIAAQLPGR TDNDIKNYWN TKLKKKLLGI 120 TPPTHPRNNQ VFFPPSLQPN LMITSTPPPP LLHPPNYNNH PLVFGCDLYD HHHQQPSCSY 180 VKQELGVEFI NGGGGDHQII NNVNNNMSFG GDEGSLMEVN EGVFWDHDGE NGGVLSGNKC 240 STGLNLKNMY YF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G36890.1	5e-78	MYB family protein

Link Out ? help Back to Top
Ensembl	Dr15348.1