PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dr15618.1

Organism

Dioscorea rotundata

Taxonomic ID

55577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Dioscoreales; Dioscoreaceae; Dioscorea

Family

bHLH

Protein Properties

Length: 826aa MW: 89702.2 Da PI: 9.2065

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dr15618.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	50.2	4.6e-16	612	658	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 hn ErrRRdriN+++ L+el+P++ K++Ka++L +A+eY+k Lq Dr15618.1 612 VHNLSERRRRDRINERMRALQELIPNC-----NKVDKASMLDEAIEYLKTLQ 658 6***********************8.....6****************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 826 aa Download sequence
MLAILAAFER RNGLGRRSRL LVLEEKMKEK GKTRALVSQS IMTDSSSVVE GEENQVKGMI 60 LRPEHKKMKY KKDKILSLEN LVKRRWNWFP TATCVLCHAG IESVDHLFIQ CSFASQINRM 120 LLSKFSAASE GFQAKLDDAM FSVRRSLEFL ETQNVQATNP GHWKRTSGRP LWASPNHVGP 180 DDEFVELLWE KGQILVQGPS NRSNKSYFTS NASSQTGKAH GKDGNVKMGR FSSMDQVVDE 240 LSPTVPSVVR LSSQEDDNNN DPWMNYPIED PLFQIDYCSE FLSEFSGVDL NSVTTNAKTT 300 AERITSFGCG RASQNIQVGN ASRGITEGSD PPSRIRKSQL FHLPQQCQTA IPNSKPKEAT 360 EFRNHGITSR HQGSSTDGVG VGVGVGDGSA LLKTWSQKKQ DTASTKVPQA SSGGQGGAGL 420 MNFSHFSRAA SSFKANLQGS DRLRSNEKAS TAGSSKPLES SLINSNSGFK SISGPIQCKP 480 ASTLLHDVVQ RSSTKCTQDV ASVQQAEAHK CHGKVAIASP KPSDQSKGQS TGLSGRQETE 540 KAPEAPVASS VCSGNSVGAA SNDPKYRAVK RKCREGEESQ YQSDDVEDDS VGLKISDSAH 600 CKSAKRSRAA EVHNLSERRR RDRINERMRA LQELIPNCNK VDKASMLDEA IEYLKTLQLQ 660 VQNLMFNLQS RQIMSMGAGL CMPPMMMPPA MQHLRAAPMY SPMGLGMSMG MGMGMGYGMG 720 MFDMNGSPSL HGLPGGPASL QMFGIPGQGL PIPTPQLPQY TPYSTHPMRP NTMGERSGTT 780 SPVSAALPVV ETAPSSNSKD LPHLKVNSEA PHQTKADDSP IPSSSI

Sequence ? help Back to Top

Protein Sequence Length: 826 aa Download sequence

MLAILAAFER RNGLGRRSRL LVLEEKMKEK GKTRALVSQS IMTDSSSVVE GEENQVKGMI  60
LRPEHKKMKY KKDKILSLEN LVKRRWNWFP TATCVLCHAG IESVDHLFIQ CSFASQINRM  120
LLSKFSAASE GFQAKLDDAM FSVRRSLEFL ETQNVQATNP GHWKRTSGRP LWASPNHVGP  180
DDEFVELLWE KGQILVQGPS NRSNKSYFTS NASSQTGKAH GKDGNVKMGR FSSMDQVVDE  240
LSPTVPSVVR LSSQEDDNNN DPWMNYPIED PLFQIDYCSE FLSEFSGVDL NSVTTNAKTT  300
AERITSFGCG RASQNIQVGN ASRGITEGSD PPSRIRKSQL FHLPQQCQTA IPNSKPKEAT  360
EFRNHGITSR HQGSSTDGVG VGVGVGDGSA LLKTWSQKKQ DTASTKVPQA SSGGQGGAGL  420
MNFSHFSRAA SSFKANLQGS DRLRSNEKAS TAGSSKPLES SLINSNSGFK SISGPIQCKP  480
ASTLLHDVVQ RSSTKCTQDV ASVQQAEAHK CHGKVAIASP KPSDQSKGQS TGLSGRQETE  540
KAPEAPVASS VCSGNSVGAA SNDPKYRAVK RKCREGEESQ YQSDDVEDDS VGLKISDSAH  600
CKSAKRSRAA EVHNLSERRR RDRINERMRA LQELIPNCNK VDKASMLDEA IEYLKTLQLQ  660
VQNLMFNLQS RQIMSMGAGL CMPPMMMPPA MQHLRAAPMY SPMGLGMSMG MGMGMGYGMG  720
MFDMNGSPSL HGLPGGPASL QMFGIPGQGL PIPTPQLPQY TPYSTHPMRP NTMGERSGTT  780
SPVSAALPVV ETAPSSNSKD LPHLKVNSEA PHQTKADDSP IPSSSI

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	617	622	ERRRRD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G09530.2	3e-26	bHLH family protein

Link Out ? help Back to Top
Ensembl	Dr15618.1