PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dr15638.1

Organism

Dioscorea rotundata

Taxonomic ID

55577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Dioscoreales; Dioscoreaceae; Dioscorea

Family

SBP

Protein Properties

Length: 1116aa MW: 122889 Da PI: 8.1256

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dr15638.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	128.7	2.2e-40	219	296	1	78
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +CqvegC+adl +ak+yhrrhkvCe+h+ka++++v++ qrfCqqCsrfh l+efD++krsCrrrLa+hn+rrrk+++ Dr15638.1 219 ACQVEGCAADLIDAKDYHRRHKVCEMHAKASSAVVANAVQRFCQQCSRFHLLQEFDDGKRSCRRRLAGHNRRRRKTHP 296 5**************************************************************************976 PP

Sequence ? help Back to Top
Protein Sequence Length: 1116 aa Download sequence
ETADPVRTKN VPKKMSITTK LSHHKQQGHY QTNKNKTRKL SFPKPVMNPT ADQGLKCGDW 60 RHENGSVTDM EARLGGESHQ LYGVGPSEVN GRGGKSLEWD LNDWNWDGDR FRAIPLNASP 120 SDCRSKQLPH VLAARGLSNN SSSCSEGTEL AIVGKGKGTL EKRRRAAVVG DDEPNDEVGS 180 FSLKLGGHDY PVVEADLANW DGKNGKRSKL QGASANRSAC QVEGCAADLI DAKDYHRRHK 240 VCEMHAKASS AVVANAVQRF CQQCSRFHLL QEFDDGKRSC RRRLAGHNRR RRKTHPDAAV 300 SGNGLTDERA SSYLLISLLR ILTNLHTDDS DKSKDQDLLS HLLRNLASLA GSLDSQNLSG 360 LLRANEDTRK TGSGTATASE ALLSNGTAVQ KSSGPLCGPS TVTYMNGTQN LTMPPADQSL 420 SVPAATVEMP VNRNVREEAF VEARPPVSSK TSTVLVPGKD AVSAKPAAAA ATMLSLLPEM 480 VPAGSVSKKM QLKDFDLNDT YDDTEECIRR CEQLAMPATM EAGSPTCMSW MMPDSHHSSP 540 PQTSGNSEPT STQSLSSSNG DAQSRTDRII FKLFGKDPRD FPIDLRTQVF NWLSHSPTEM 600 ESYIRPGCII LTIYLRLPES EWKELYQDLS SGLHKLLQIS DGDFWRSGWI YARVQHQIAF 660 LYNGRVVLNT PLLLKSPRYL DVLCISPIAV PTASRVNFKV KGFGMTQSTV RILCAFEGKY 720 LVQETLQALV EGRNDGRECG GSQCLSFSCS LPNTSGRGFI EVEDHGLSSI FFPFLVAEED 780 VCSEIRMLEG AIDVDSNDVH LQEQIDVMNA RNLAMEFLHE MGWFLRRSQL MSRVKEVGSC 840 PNTFPLTRFW WLMSFAVDRE WSAVVKKLLD LLFQGIVDLG NISPSSVLSS SDLLHSAVRK 900 KCKSIVEVLL RYAPTSALKG TSDGNYLFRP DMPGPLNITP LHIAASNSGA ENILDSLTND 960 PGQLGITAWR SARDSTGFSP EDYARSRGYE SYLQLVQKKI NRQFDKGSVV LDISGSSLAT 1020 NSSQKQLDNL CSSKLSGFQI DMRKMEHIIR PACKLCAQQV IYRSPVGRSL LYRPVMLSMV 1080 GIAAVCVCVG LLLKSPPLVL YLNHPFRWES LGYGSI

Sequence ? help Back to Top

Protein Sequence Length: 1116 aa Download sequence

ETADPVRTKN VPKKMSITTK LSHHKQQGHY QTNKNKTRKL SFPKPVMNPT ADQGLKCGDW  60
RHENGSVTDM EARLGGESHQ LYGVGPSEVN GRGGKSLEWD LNDWNWDGDR FRAIPLNASP  120
SDCRSKQLPH VLAARGLSNN SSSCSEGTEL AIVGKGKGTL EKRRRAAVVG DDEPNDEVGS  180
FSLKLGGHDY PVVEADLANW DGKNGKRSKL QGASANRSAC QVEGCAADLI DAKDYHRRHK  240
VCEMHAKASS AVVANAVQRF CQQCSRFHLL QEFDDGKRSC RRRLAGHNRR RRKTHPDAAV  300
SGNGLTDERA SSYLLISLLR ILTNLHTDDS DKSKDQDLLS HLLRNLASLA GSLDSQNLSG  360
LLRANEDTRK TGSGTATASE ALLSNGTAVQ KSSGPLCGPS TVTYMNGTQN LTMPPADQSL  420
SVPAATVEMP VNRNVREEAF VEARPPVSSK TSTVLVPGKD AVSAKPAAAA ATMLSLLPEM  480
VPAGSVSKKM QLKDFDLNDT YDDTEECIRR CEQLAMPATM EAGSPTCMSW MMPDSHHSSP  540
PQTSGNSEPT STQSLSSSNG DAQSRTDRII FKLFGKDPRD FPIDLRTQVF NWLSHSPTEM  600
ESYIRPGCII LTIYLRLPES EWKELYQDLS SGLHKLLQIS DGDFWRSGWI YARVQHQIAF  660
LYNGRVVLNT PLLLKSPRYL DVLCISPIAV PTASRVNFKV KGFGMTQSTV RILCAFEGKY  720
LVQETLQALV EGRNDGRECG GSQCLSFSCS LPNTSGRGFI EVEDHGLSSI FFPFLVAEED  780
VCSEIRMLEG AIDVDSNDVH LQEQIDVMNA RNLAMEFLHE MGWFLRRSQL MSRVKEVGSC  840
PNTFPLTRFW WLMSFAVDRE WSAVVKKLLD LLFQGIVDLG NISPSSVLSS SDLLHSAVRK  900
KCKSIVEVLL RYAPTSALKG TSDGNYLFRP DMPGPLNITP LHIAASNSGA ENILDSLTND  960
PGQLGITAWR SARDSTGFSP EDYARSRGYE SYLQLVQKKI NRQFDKGSVV LDISGSSLAT  1020
NSSQKQLDNL CSSKLSGFQI DMRKMEHIIR PACKLCAQQV IYRSPVGRSL LYRPVMLSMV  1080
GIAAVCVCVG LLLKSPPLVL YLNHPFRWES LGYGSI

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G47070.1	1e-175	SBP family protein

Link Out ? help Back to Top
Ensembl	Dr15638.1