PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dr15646.1

Organism

Dioscorea rotundata

Taxonomic ID

55577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Dioscoreales; Dioscoreaceae; Dioscorea

Family

MYB

Protein Properties

Length: 272aa MW: 31077.7 Da PI: 6.0488

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dr15646.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	55	1.9e-17	27	74	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT eEd l++++ +G g+W++ ar g++Rt+k+c++rw++yl Dr15646.1 27 RGPWTMEEDFMLINYISNHGEGRWNSLARQAGLKRTGKSCRLRWLNYL 74 89********************************************97 PP
2	Myb_DNA-binding	52.4	1.2e-16	80	123	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg+ T+eE++l+++++ ++G++ W++Ia+ ++ gRt++++k++w++ Dr15646.1 80 RGNITPEEQLLILELHSRWGNR-WSKIAQQLP-GRTDNEIKNYWRT 123 7999****************.*****.*********96 PP

Sequence ? help Back to Top
Protein Sequence Length: 272 aa Download sequence
MELVHGKPCS SGSATPPSDQ EDMDLRRGPW TMEEDFMLIN YISNHGEGRW NSLARQAGLK 60 RTGKSCRLRW LNYLRPDVRR GNITPEEQLL ILELHSRWGN RWSKIAQQLP GRTDNEIKNY 120 WRTRVQKHAK QLQCDVNSKQ FKDVVKYIWM PRLLERIHAT GSSHNNIYQY SSINGGGGGG 180 VLNQGNINLS LINGKEVEDK GSVVMEEEEE EEEKEMVSSS SSCLWSESLL SPSSSGCGND 240 QSVLMDFHEV ERWWDGAGHM ISDNLWNVGH EF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G48000.1	1e-81	MYB family protein

Link Out ? help Back to Top
Ensembl	Dr15646.1