PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dr15730.1

Organism

Dioscorea rotundata

Taxonomic ID

55577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Dioscoreales; Dioscoreaceae; Dioscorea

Family

HD-ZIP

Protein Properties

Length: 185aa MW: 21787.1 Da PI: 4.5603

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dr15730.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	62.1	8.1e-20	29	82	3	56
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k+ +f++eq++ Le++Fe + ++ +++ +LA++lgL+ rqV +WFqN+Ra++k Dr15730.1 29 KKKRFSEEQIKSLETMFETQTKLEPRQKLQLARELGLQPRQVAIWFQNKRARWK 82 7788*************************************************9 PP
2	HD-ZIP_I/II	121.1	5.7e-39	29	120	2	93
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 kk+r+s+eq+k+LE++Fe+++kLep++K +lareLglqprqva+WFqn+RAR+k+kqlE++y++L++ y +l ++ e+L++e++ L+++l++ Dr15730.1 29 KKKRFSEEQIKSLETMFETQTKLEPRQKLQLARELGLQPRQVAIWFQNKRARWKSKQLEREYSSLRSDYXQLLSSFEALQREKQILAKQLQK 120 9****************************************************************************************987 PP

Sequence ? help Back to Top
Protein Sequence Length: 185 aa Download sequence
MESEDFISAI EDGGEGFVFK GNCSGNKDKK KRFSEEQIKS LETMFETQTK LEPRQKLQLA 60 RELGLQPRQV AIWFQNKRAR WKSKQLEREY SSLRSDYXQL LSSFEALQRE KQILAKQLQK 120 LAELIGKQKE GNESELKNGS KEDKMEKKVS FFSQEEEEEE EEEEEAMAVV NSGEQEWWEC 180 WPLNE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G46680.1	2e-44	HD-ZIP family protein

Link Out ? help Back to Top
Ensembl	Dr15730.1