PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dr15756.1

Organism

Dioscorea rotundata

Taxonomic ID

55577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Dioscoreales; Dioscoreaceae; Dioscorea

Family

MYB

Protein Properties

Length: 342aa MW: 37977.7 Da PI: 6.5016

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dr15756.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	56.4	6.7e-18	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg W++eEde+l+++v+ +G g+W+ ++++ g+ R++k+c++rw +yl Dr15756.1 14 RGLWSPEEDEKLIRYVTTHGYGCWSEVPEKAGLQRCGKSCRLRWINYL 61 788*******************************************97 PP
2	Myb_DNA-binding	56.4	6.9e-18	67	111	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rgr+T++E++l+++++++ G++ W+ Ia++++ gRt++++k++w+++ Dr15756.1 67 RGRFTPDEEKLIINLHALVGNR-WAHIASHLP-GRTDNEIKNYWNSW 111 89******************.*****.**********98 PP

Sequence ? help Back to Top
Protein Sequence Length: 342 aa Download sequence
MGHHSCCNQQ KVKRGLWSPE EDEKLIRYVT THGYGCWSEV PEKAGLQRCG KSCRLRWINY 60 LRPDIRRGRF TPDEEKLIIN LHALVGNRWA HIASHLPGRT DNEIKNYWNS WIKKKIRKPL 120 STTTTTAGAA TTATSSSSTT MSTIPSGLDL VQMSYNTSID QLDSLLTTTT ATTTTXAKSS 180 VTHENIFATS HHTCPIFMFD PSINGDXSAS PSTNNIWNIN VDTNMDPNYL PPLVDGLGNM 240 GMVGMDEGVL HCCGDDDHGG HETSRDSFGK QDQQQLISDW MDSQHYPGLL FWDTATSVQG 300 HATHATTPHH EHEPLQQTQT NNNILINDSI LSTSSSSFPS SL

Sequence ? help Back to Top

Protein Sequence Length: 342 aa Download sequence

MGHHSCCNQQ KVKRGLWSPE EDEKLIRYVT THGYGCWSEV PEKAGLQRCG KSCRLRWINY  60
LRPDIRRGRF TPDEEKLIIN LHALVGNRWA HIASHLPGRT DNEIKNYWNS WIKKKIRKPL  120
STTTTTAGAA TTATSSSSTT MSTIPSGLDL VQMSYNTSID QLDSLLTTTT ATTTTXAKSS  180
VTHENIFATS HHTCPIFMFD PSINGDXSAS PSTNNIWNIN VDTNMDPNYL PPLVDGLGNM  240
GMVGMDEGVL HCCGDDDHGG HETSRDSFGK QDQQQLISDW MDSQHYPGLL FWDTATSVQG  300
HATHATTPHH EHEPLQQTQT NNNILINDSI LSTSSSSFPS SL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G63910.1	2e-83	MYB family protein

Link Out ? help Back to Top
Ensembl	Dr15756.1