PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dr15858.1

Organism

Dioscorea rotundata

Taxonomic ID

55577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Dioscoreales; Dioscoreaceae; Dioscorea

Family

AP2

Protein Properties

Length: 243aa MW: 27710.6 Da PI: 9.7884

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dr15858.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	45.6	1.7e-14	21	62	1	46
AP2 1 sgykGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaa 46 +gy GVr ++ +gr++AeIr + + kr++lg+f+t+eeAa a+ Dr15858.1 21 TGYLGVRKRR-SGRYAAEIRNpF-----TkKRHWLGTFDTPEEAAVAY 62 699**888.8*****66.....34*************998 PP
2	AP2	49	1.6e-15	112	155	1	48
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaia 48 +gy GVr+++ gr++AeIr ps+ +kr++lg+f+t+eeAa a++ Dr15858.1 112 TGYLGVRRRP-LGRYAAEIRNPST---KKRHWLGTFDTPEEAAVAYDM 155 699*****.8*****965...5****************96 PP

Sequence ? help Back to Top
Protein Sequence Length: 243 aa Download sequence
MLDLKCIILP CHQRRRCRTS TGYLGVRKRR SGRYAAEIRN PFTKKRHWLG TFDTPEEAAV 60 AYSMSSITFR GIEKAQTNFC HKFLTMPSPS PPAPPPSPLA RSNTRRRGRT STGYLGVRRR 120 PLGRYAAEIR NPSTKKRHWL GTFDTPEEAA VAYDMSSITF RGIEKAQTNF CHKFLTMPSP 180 SPPSPPPSLL PSEKEKEYCF ENNLEINDDH DHLVDRDDDE WINITIILQS FCQSNALPSS 240 LIL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	14	30	RRRCRTSTGYLGVRKRR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G13910.1	2e-22	ERF family protein

Link Out ? help Back to Top
Ensembl	Dr15858.1