PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dr15930.1
Organism
Dioscorea rotundata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Dioscoreales; Dioscoreaceae; Dioscorea
Family M-type_MADS
Protein Properties Length: 248aa    MW: 26931.2 Da    PI: 9.1953
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dr15930.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF74.39.6e-241660145
               S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
     SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45
               k+ien+  rqv fskRr+g++KKA+ELS+LC+aeva+i+fs+ gk
  Dr15930.1 16 KKIENEESRQVCFSKRRAGLFKKANELSILCGAEVALIVFSPAGK 60
               68*****************************************98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 248 aa     Download sequence    
MAKKKTSMGR QRIEIKKIEN EESRQVCFSK RRAGLFKKAN ELSILCGAEV ALIVFSPAGK  60
PFSFGHPHVD SISNRFLANS MATSNYVEPR HGXIMRELNR KTTELVGLSE AAKKKKAMLE  120
EETIKRNNGD EPQRLLWGAN AEELDLEELV HLRSSLEELK MSVGRRAERI NSETAVAARN  180
LFSMCNGINN GFAVASGGGG GGFVHGGGVF GINHGDEEAA AYSFIPAAAA AASSAHHHHG  240
FGYGHGFF
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24840.14e-31M-type_MADS family protein