PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dr16011.1

Organism

Dioscorea rotundata

Taxonomic ID

55577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Dioscoreales; Dioscoreaceae; Dioscorea

Family

GRAS

Protein Properties

Length: 1120aa MW: 126310 Da PI: 6.1759

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dr16011.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	95.7	7e-30	111	416	25	367
GRAS 25 arlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqaIleavege.ervHiiDfdisqGl 123 +rl ++sp g++m+Rl ++++ +e++s++ +al++f+e++P+ +f+hl++N aIle++ + + +HiiDfd+++G Dr16011.1 111 KRLCSQVSPMGTTMERLGHHLLHFD----------------DHYLREESSKNYGMALRAFYEICPYGRFAHLATNFAILESLPCDvQVIHIIDFDVGEGE 194 5555555555555555555543321................1222334477888999***********************9997889******* PP GRAS 124 QWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvslese 223 QWpaLl L+ R s+++ +++ +e+++t+++L +fA ++g++++ + + +++l l + + v+++E + n+++ l ++ +++ Dr16011.1 195 QWPALLAVLNHR----ISVKLSVIHC------KEVKKTRNNLCSFACSIGLSLQVEEIEMEEL--LLMFDRTVNENEWFVFNCMVGLPHMG-----EPKR 277 *******9....579**9......89******************9844433..3345557899***********8.....4455 PP GRAS 224 rdevLklvkslsPkvvvvveqeadh.nsesFlerfl....ealeyysalfdsleaklpres.eerikvErellgreivnvvacegaerrerhetlekWre 317 r++vL++ ++ kvv+ +e F r+ + l alf+sle +p++ +r+++E ++g+ ++ + e +e Dr16011.1 278 RRQVLEF-TRVAEKVVTSYKGIGMIsYGEGFGSRLKpfsdDHLVSSHALFESLEWHFPSHLsLARTTMECLFVGPCVSLIDFVEDFE------------- 363 6678875.67899999876665788998888644446788999********988659999999998887766554455554............. PP GRAS 318 rleeaGFkpvplsekaakqaklllrkvksdgyrveee...sgslvlgWkdrpL 367 + G+++ ++s++ +++k ++ k ++ y+++ + ++++vl W++ p+ Dr16011.1 364 PFCGHGLRECRVSKERLMEVKEMVMKGRDEPYEIKVNgycENEMVLEWRGTPM 416 68888888888888888888888888887778888666668888888888876 PP

Sequence ? help Back to Top
Protein Sequence Length: 1120 aa Download sequence
MEFYNGFENF MDFYEDFSLE DMVLFPSCND HQYLWIDEEE ASSFLQDLSE MSSNDQQHHH 60 HHHHHQQQQQ QQEFVSNTLE NYQELSIFHL LKAYGEAKEN KHIELGDVIE KRLCSQVSPM 120 GTTMERLGHH LLHFDDHYLR EESSKNYGMA LRAFYEICPY GRFAHLATNF AILESLPCDV 180 QVIHIIDFDV GEGEQWPALL AVLNHRISVK LSVIHCKEVK KTRNNLCSFA CSIGLSLQVE 240 EIEMEELLLM FDRTVNENEW FVFNCMVGLP HMGEPKRRRQ VLEFTRVAEK VVTSYKGIGM 300 ISYGEGFGSR LKPFSDDHLV SSHALFESLE WHFPSHLSLA RTTMECLFVG PCVSLIDFVE 360 DFEPFCGHGL RECRVSKERL MEVKEMVMKG RDEPYEIKVN GYCENEMVLE WRGTPMLCNN 420 GHGRRFESFS SLLAFRVRLL LRCSSSSSSM MGSLLFFIWW LCLRWGPCAG LSDEGIALMR 480 FRERVELDPY GALSGWGGDG GGGENPCEWV GVGCSDGRVV DLNLSNLRLK GTLTPELGKL 540 IQLTSLVLHN NSFYGVIPRE IAELQNLKVL DLGHNNLSGL IPSELSSVMS LEILILRDNM 600 FVGDLPTKLQ QLNIMSELEV DREMLLSNKA YITSFSLSSA YDFPYFSMTY PPLCDRNARK 660 GTMRKLLHRG GKAVAPPAPS PSPSPAPAPS PNHKNRHSLA KKHHKNRHSS PLVSPSLSPS 720 LSPNLSQSPV NKSLAPSPVN EQPVYSLQKH PDSHASSSSP SPTSHSGKSH SSSLVIYMPI 780 AGGFSFLLAI SAIYFLCFRT NKVGTVRPWS TGLSGQLQKA FMADGVPALR RSELEAACED 840 FSNVIGTLSD WKVYKGTLSN GVEIAVASSM ITSAKDWSKD SESQLRNKIS TLSRLNHKNF 900 MNLLGYCEEE VPFTRIMVFE YAPNGTLFEH LHIKEAEHLD WAARLRIAMG IAYCLEHMLQ 960 LEPPFVPRNL NSSSIYLTED YAAKVSDCVC LNQTKEANSA QDNSDLTNIV YKFGILLLEI 1020 LSGRRPFSED DDLLVCWASC YFTGKRPLKD MLDTTLTSFR ENDLGAFSEV LRSCINPDPS 1080 KRPTMSEVTK SLRQITSISP DAASPRLSPL WWAELEILAT

Sequence ? help Back to Top

Protein Sequence Length: 1120 aa Download sequence

MEFYNGFENF MDFYEDFSLE DMVLFPSCND HQYLWIDEEE ASSFLQDLSE MSSNDQQHHH  60
HHHHHQQQQQ QQEFVSNTLE NYQELSIFHL LKAYGEAKEN KHIELGDVIE KRLCSQVSPM  120
GTTMERLGHH LLHFDDHYLR EESSKNYGMA LRAFYEICPY GRFAHLATNF AILESLPCDV  180
QVIHIIDFDV GEGEQWPALL AVLNHRISVK LSVIHCKEVK KTRNNLCSFA CSIGLSLQVE  240
EIEMEELLLM FDRTVNENEW FVFNCMVGLP HMGEPKRRRQ VLEFTRVAEK VVTSYKGIGM  300
ISYGEGFGSR LKPFSDDHLV SSHALFESLE WHFPSHLSLA RTTMECLFVG PCVSLIDFVE  360
DFEPFCGHGL RECRVSKERL MEVKEMVMKG RDEPYEIKVN GYCENEMVLE WRGTPMLCNN  420
GHGRRFESFS SLLAFRVRLL LRCSSSSSSM MGSLLFFIWW LCLRWGPCAG LSDEGIALMR  480
FRERVELDPY GALSGWGGDG GGGENPCEWV GVGCSDGRVV DLNLSNLRLK GTLTPELGKL  540
IQLTSLVLHN NSFYGVIPRE IAELQNLKVL DLGHNNLSGL IPSELSSVMS LEILILRDNM  600
FVGDLPTKLQ QLNIMSELEV DREMLLSNKA YITSFSLSSA YDFPYFSMTY PPLCDRNARK  660
GTMRKLLHRG GKAVAPPAPS PSPSPAPAPS PNHKNRHSLA KKHHKNRHSS PLVSPSLSPS  720
LSPNLSQSPV NKSLAPSPVN EQPVYSLQKH PDSHASSSSP SPTSHSGKSH SSSLVIYMPI  780
AGGFSFLLAI SAIYFLCFRT NKVGTVRPWS TGLSGQLQKA FMADGVPALR RSELEAACED  840
FSNVIGTLSD WKVYKGTLSN GVEIAVASSM ITSAKDWSKD SESQLRNKIS TLSRLNHKNF  900
MNLLGYCEEE VPFTRIMVFE YAPNGTLFEH LHIKEAEHLD WAARLRIAMG IAYCLEHMLQ  960
LEPPFVPRNL NSSSIYLTED YAAKVSDCVC LNQTKEANSA QDNSDLTNIV YKFGILLLEI  1020
LSGRRPFSED DDLLVCWASC YFTGKRPLKD MLDTTLTSFR ENDLGAFSEV LRSCINPDPS  1080
KRPTMSEVTK SLRQITSISP DAASPRLSPL WWAELEILAT

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G08250.1	6e-14	GRAS family protein

Link Out ? help Back to Top
Ensembl	Dr16011.1