PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dr16020.1

Organism

Dioscorea rotundata

Taxonomic ID

55577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Dioscoreales; Dioscoreaceae; Dioscorea

Family

MYB

Protein Properties

Length: 1716aa MW: 187203 Da PI: 5.7144

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dr16020.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	22.9	1.9e-07	816	857	3	46
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +W +eE e + + + +G++ +++Ia+ + ++t +c+++++k Dr16020.1 816 PWXPEEREVFMEMLATWGKD-FSKIASFLK-HKTIADCVEFYYK 857 8***************99.****9.*********98 PP
2	Myb_DNA-binding	25	4.4e-08	1026	1065	4	45
S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 WT E +++a ++G++ +++I+r++ Rt +qck ++ Dr16020.1 1026 WTDAEKTVFIQALSMYGKD-FARISRCVA-SRTKEQCKIFFS 1065 ***************99.*****.******8775 PP

Sequence ? help Back to Top
Protein Sequence Length: 1716 aa Download sequence
MPPEPLPWDR KDFVSKDRKH DRGAGYEAVG GGSGSFSSST PRWREPYHGH RDFTRGSPRR 60 PPPGNRFSDP RNFGQIFGFL SLRSLFPGGS DHFSLFLFGE GYYRQSGNYH QLHGDDARPG 120 DRYWPEDENY RPSFGRYNGN RSNSGGSSGR ESRGYFRRPP YWDSGDFSRA HHDPPPPTAP 180 RSIAVPVTPP VPQTQPSSRD VQEKPVSTVD DDALVDNASA TCKKSDXDHS LGSISWKPLK 240 WTRSASISSL KTARSEVDES GREAKETPTR SSAASPQESE DGVAKKKQRL GWGQGLAKYE 300 KQKVGGSDDG STKNGLVPCD SSSKSTVSDT SPKEAGSAGC LSPVTRSSIA CSSSPGLLLV 360 IFYAVSDYHN TAFCCTVMAG VEDKPCVRAS DPDTTDLSGS SIIDSQNNVK EFLFEHYEAD 420 PMGTLNKVLT DLLQPEDSCF GDSTFTRHTA ISKLLLLKGD ISKELEKTEC DIDLFENELK 480 SLDFDGNNBQ CHVXCTPPVI IATEPCGESA DGTSVISFSS ALVKDQQIAS ISTQVIESLD 540 DCDAALKDAG SESSDTFSSK LGKASLGKAI SDCDSQILAV SPLVEDVDFT DQAPDPLPPA 600 ADCIGRDKND MEYANFSENS CGTGGSSLFS AILESNRGLK EEAMKGLPND APLFDFWKLG 660 KLSSLQANDM LIKEKLASRK HRLKFKELAL TLKYRAFHHL WAEDLRLLSI RKYRSKSQKR 720 IEPSNRSSQS SSQKHRSSFR SRFALPAGNL TLVPTSEIVD YTKQLKSDSK LKVYRSNLKM 780 PALNLDEESR KTVFVTHNGL IEDPIAFEKE KEMINPWXPE EREVFMEMLA TWGKDFSKIA 840 SFLKHKTIAD CVEFYYKNHK SDSFREVMKC LALRKQWQLP ANNYLSTSGK RSQRDFNAVP 900 LDMLEAVSMV AAHDNETTGN QRKFDQRPGF GSYDDFRMPG DAHGSVDKRD LLRHEKETTA 960 ADALAGIRGA LSSEAMSPWI ATSIGPAERI NFAMPDRPLT PGVTQSIDEE EAFSDEGFGE 1020 FDSADWTDAE KTVFIQALSM YGKDFARISR CVASRTKEQC KIFFSKARKC LGLDILYQGP 1080 CNVATPRSDT NGGRSDTDDG FAAEMDSAVC STQSCSRVDT EMTRSVVNTV GEDFAHAGNL 1140 SLQMEMDRSS EHHVSEGIDQ EEIETKATDL DCDLNNDGLM RLGDDSRPVH VPKDASDAVV 1200 GSHXNVSSGG VAGFVADTEL KKSGNCPAVS SSDTVSLEYV ASDCLKLRTV EMTHGRSNEE 1260 NCSNGTEMQD LDSXFVEGQG VKIGTDSNKS GSLCFETDPC ANETASCLGN KVTACSSSIF 1320 PPNYHNQIQQ DLLPSIQKRY LLNSLNQESS ISVPVLPDPS SSSFGDPVHT GLQSNLIYEG 1380 XKQHENPVTG KLYQQYFLGS STLNQISQTL QALTGYPLQS VDQQEFKQGP EMISGRSEIQ 1440 QNCQNGNGLS PSSGIFDIGL HNLKPVDPKI SHQRSEMLGS GRNDEQPNTL PKPCTQSFSE 1500 NEEQSRQTGD VKLFGKILSN PSLQKSKSTS CESSGGKPPG QKRDSAQKPS NCQNDASAVA 1560 SLSHSSRHSS PTDIPVRSYG YWDGNRIQTG FSSLPESAVL LTKLQGPLAG LSFYPTKDAL 1620 PSNTRVRTEY QQAYTQPVSS GGTLPXFQQQ GRTARQGNAA AVVGGGILGN GGGGGSGGSN 1680 AGGCTGVSDP VAAIKMHYAR RAKLLASLES WRQTDR

Sequence ? help Back to Top

Protein Sequence Length: 1716 aa Download sequence

MPPEPLPWDR KDFVSKDRKH DRGAGYEAVG GGSGSFSSST PRWREPYHGH RDFTRGSPRR  60
PPPGNRFSDP RNFGQIFGFL SLRSLFPGGS DHFSLFLFGE GYYRQSGNYH QLHGDDARPG  120
DRYWPEDENY RPSFGRYNGN RSNSGGSSGR ESRGYFRRPP YWDSGDFSRA HHDPPPPTAP  180
RSIAVPVTPP VPQTQPSSRD VQEKPVSTVD DDALVDNASA TCKKSDXDHS LGSISWKPLK  240
WTRSASISSL KTARSEVDES GREAKETPTR SSAASPQESE DGVAKKKQRL GWGQGLAKYE  300
KQKVGGSDDG STKNGLVPCD SSSKSTVSDT SPKEAGSAGC LSPVTRSSIA CSSSPGLLLV  360
IFYAVSDYHN TAFCCTVMAG VEDKPCVRAS DPDTTDLSGS SIIDSQNNVK EFLFEHYEAD  420
PMGTLNKVLT DLLQPEDSCF GDSTFTRHTA ISKLLLLKGD ISKELEKTEC DIDLFENELK  480
SLDFDGNNBQ CHVXCTPPVI IATEPCGESA DGTSVISFSS ALVKDQQIAS ISTQVIESLD  540
DCDAALKDAG SESSDTFSSK LGKASLGKAI SDCDSQILAV SPLVEDVDFT DQAPDPLPPA  600
ADCIGRDKND MEYANFSENS CGTGGSSLFS AILESNRGLK EEAMKGLPND APLFDFWKLG  660
KLSSLQANDM LIKEKLASRK HRLKFKELAL TLKYRAFHHL WAEDLRLLSI RKYRSKSQKR  720
IEPSNRSSQS SSQKHRSSFR SRFALPAGNL TLVPTSEIVD YTKQLKSDSK LKVYRSNLKM  780
PALNLDEESR KTVFVTHNGL IEDPIAFEKE KEMINPWXPE EREVFMEMLA TWGKDFSKIA  840
SFLKHKTIAD CVEFYYKNHK SDSFREVMKC LALRKQWQLP ANNYLSTSGK RSQRDFNAVP  900
LDMLEAVSMV AAHDNETTGN QRKFDQRPGF GSYDDFRMPG DAHGSVDKRD LLRHEKETTA  960
ADALAGIRGA LSSEAMSPWI ATSIGPAERI NFAMPDRPLT PGVTQSIDEE EAFSDEGFGE  1020
FDSADWTDAE KTVFIQALSM YGKDFARISR CVASRTKEQC KIFFSKARKC LGLDILYQGP  1080
CNVATPRSDT NGGRSDTDDG FAAEMDSAVC STQSCSRVDT EMTRSVVNTV GEDFAHAGNL  1140
SLQMEMDRSS EHHVSEGIDQ EEIETKATDL DCDLNNDGLM RLGDDSRPVH VPKDASDAVV  1200
GSHXNVSSGG VAGFVADTEL KKSGNCPAVS SSDTVSLEYV ASDCLKLRTV EMTHGRSNEE  1260
NCSNGTEMQD LDSXFVEGQG VKIGTDSNKS GSLCFETDPC ANETASCLGN KVTACSSSIF  1320
PPNYHNQIQQ DLLPSIQKRY LLNSLNQESS ISVPVLPDPS SSSFGDPVHT GLQSNLIYEG  1380
XKQHENPVTG KLYQQYFLGS STLNQISQTL QALTGYPLQS VDQQEFKQGP EMISGRSEIQ  1440
QNCQNGNGLS PSSGIFDIGL HNLKPVDPKI SHQRSEMLGS GRNDEQPNTL PKPCTQSFSE  1500
NEEQSRQTGD VKLFGKILSN PSLQKSKSTS CESSGGKPPG QKRDSAQKPS NCQNDASAVA  1560
SLSHSSRHSS PTDIPVRSYG YWDGNRIQTG FSSLPESAVL LTKLQGPLAG LSFYPTKDAL  1620
PSNTRVRTEY QQAYTQPVSS GGTLPXFQQQ GRTARQGNAA AVVGGGILGN GGGGGSGGSN  1680
AGGCTGVSDP VAAIKMHYAR RAKLLASLES WRQTDR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G52250.1	6e-77	MYB family protein

Link Out ? help Back to Top
Ensembl	Dr16020.1